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SCNpilot_expt_1000_bf_scaffold_41724_1

Organism: SCNPILOT_EXPT_1000_BF_Shinella_65_6

near complete RP 43 / 55 MC: 6 BSCG 46 / 51 MC: 8 ASCG 10 / 38 MC: 3
Location: 2..694

Top 3 Functional Annotations

Value Algorithm Source
ABC-type proline/glycine betaine transport system, permease component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTQ7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.5
  • Coverage: 230.0
  • Bit_score: 404
  • Evalue 6.70e-110
  • rbh
ABC-type proline/glycine betaine transport system, permease component {ECO:0000313|EMBL:EYR78774.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.5
  • Coverage: 230.0
  • Bit_score: 404
  • Evalue 9.50e-110
putative proline/glycine betaine ABC transporter,permease protein; K05846 osmoprotectant transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 82.4
  • Coverage: 227.0
  • Bit_score: 358
  • Evalue 1.30e-96

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 693
ATCGCCTTCCTCGTGCAGCCGAACCTGTTCGAGCCGCTCCTCAAACCGCTCGTGCAGGCCAATGCCCCGGCGGTCTACAACCAGGGCAGCCTCCTGTCGCTGACGCTCTCGCATCTTGCCACGGTGTTCACCGCAACGCTCGCCGCGACCGTCGTCGCCGTCGGCCTTGCCATTCTCGTGACGCGGCCGATCGGTGCGGAATTCCTGCCGCTCTCGCGCAGCCTCGTGAATATCGGCCAGACCTTTCCGCCCGTCGCCGTGCTGGCGCTTGCCGTGCCGGTCGTCGGCTTCGGCGAGAAGCCGACGCTGATCGCGCTCTTCCTCTACGGTCTCCTGCCGATCTTCGAAAATGCCATGACCGGCCTTTCCACCCTGCCGCCCGCCATCGTGGAAGCGGCGCGCGGCACGGGCATGACGGCCCGGCAGCGGCTGACCAAGGTGGAGTTGCCGCTTGCGCTGCCGATCATCCTCGCCGGCATCCGCCTTTCGGTGACGATCAGCCTGGCGACAGCCACCATCGGCTCGACGGTGGCGGCCAGGACGCTCGGCGAGGTCATCATCGCCGGCCTGCAATCGAACAACCTCGCCTTCGTGTTGCAGGGCGGCCTCGTCGTCGCGGTGCTGGCGGTGCTGATCTACGATGCCTTCTCCGCCGTCGAGCGCGTGCTGTCGCGCCGGGCCGGCCGGGTGTAG
PROTEIN sequence
Length: 231
IAFLVQPNLFEPLLKPLVQANAPAVYNQGSLLSLTLSHLATVFTATLAATVVAVGLAILVTRPIGAEFLPLSRSLVNIGQTFPPVAVLALAVPVVGFGEKPTLIALFLYGLLPIFENAMTGLSTLPPAIVEAARGTGMTARQRLTKVELPLALPIILAGIRLSVTISLATATIGSTVAARTLGEVIIAGLQSNNLAFVLQGGLVVAVLAVLIYDAFSAVERVLSRRAGRV*