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SCNpilot_expt_300_bf_UNK

In projects: SCNPILOT_EXPT_300_BF
Displaying items 251-300 of 24308 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_19761
Species: Acidovorax ebreus (50%)
2 1451 bp 66.99 15.05 100.07
SCNpilot_expt_300_bf_scaffold_24623 1 1236 bp 32.85 14.82 39.56
SCNpilot_expt_300_bf_scaffold_26070
Species: Rhodanobacter spathiphylli (100%)
1 1175 bp 64.43 14.74 96.00
SCNpilot_expt_300_bf_scaffold_26079
Species: Adineta vaga (100%)
1 1175 bp 32.43 14.74 89.87
SCNpilot_expt_300_bf_scaffold_23013
Species: Burkholderia cenocepacia (100%)
1 1303 bp 62.24 14.64 99.69
SCNpilot_expt_300_bf_scaffold_5208 5 4543 bp 30.93 14.59 26.35
SCNpilot_expt_300_bf_scaffold_16837
Phylum: Bacteroidetes (66.67%)
3 1606 bp 41.22 14.53 88.36
SCNpilot_expt_300_bf_scaffold_28100
Species: Adineta vaga (100%)
1 1082 bp 32.35 14.38 92.61
SCNpilot_expt_300_bf_scaffold_19084 2 1486 bp 27.59 14.36 32.50
SCNpilot_expt_300_bf_scaffold_11398
Species: Xylella fastidiosa (100%)
1 2030 bp 55.76 14.34 16.85
SCNpilot_expt_300_bf_scaffold_7341
Species: [Clostridium] leptum (50%)
2 2608 bp 53.30 14.24 40.26
SCNpilot_expt_300_bf_scaffold_19550
Class: Gammaproteobacteria (66.67%)
3 2513 bp 68.76 14.18 101.11
SCNpilot_expt_300_bf_scaffold_14621 2 2426 bp 29.51 14.17 58.49
SCNpilot_expt_300_bf_scaffold_26619
Species: Adineta vaga (100%)
1 1149 bp 35.51 13.98 99.74
SCNpilot_expt_300_bf_scaffold_26164
Species: Sorangium cellulosum (100%)
1 1171 bp 30.57 13.93 38.94
SCNpilot_expt_300_bf_scaffold_6801
Species: Oncorhynchus mykiss (50%)
2 2711 bp 33.57 13.80 87.75
SCNpilot_expt_300_bf_scaffold_29205
Species: Adineta vaga (100%)
1 1037 bp 29.22 13.80 98.07
SCNpilot_expt_300_bf_scaffold_27865 0 1091 bp 32.72 13.57 0.00
SCNpilot_expt_300_bf_scaffold_6849
Species: Rhodococcus equi (50%)
4 2704 bp 66.42 13.55 93.86
SCNpilot_expt_300_bf_scaffold_33997
Species: Adineta vaga (100%)
1 1546 bp 27.68 13.31 14.36
SCNpilot_expt_300_bf_scaffold_33405 2 1679 bp 27.28 13.30 43.06
SCNpilot_expt_300_bf_scaffold_28081
Genus: Rhodanobacter (66.67%)
3 1082 bp 55.91 13.22 75.42
SCNpilot_expt_300_bf_scaffold_19158
Species: Acidovorax delafieldii (50%)
2 1482 bp 62.28 13.21 73.68
SCNpilot_expt_300_bf_scaffold_18276 1 1526 bp 25.10 13.16 6.09
SCNpilot_expt_300_bf_scaffold_714
Order: Burkholderiales (75%)
16 17069 bp 64.93 13.15 89.50
SCNpilot_expt_300_bf_scaffold_7085
Species: Pseudomonas aeruginosa (60%)
5 2655 bp 64.56 13.14 85.65
SCNpilot_expt_300_bf_scaffold_29466 1 1026 bp 29.82 12.97 94.15
SCNpilot_expt_300_bf_scaffold_29600 1 1670 bp 32.04 12.93 19.40
SCNpilot_expt_300_bf_scaffold_29846 2 1010 bp 34.75 12.92 57.33
SCNpilot_expt_300_bf_scaffold_18760 1 1502 bp 31.03 12.53 15.38
SCNpilot_expt_300_bf_scaffold_26638
Species: Genlisea aurea (50%)
2 1148 bp 29.18 12.46 69.25
SCNpilot_expt_300_bf_scaffold_11725
Species: Runella slithyformis (50%)
2 1997 bp 49.52 12.44 92.54
SCNpilot_expt_300_bf_scaffold_10202
Domain: Bacteria (75%)
4 2168 bp 49.91 12.39 71.82
SCNpilot_expt_300_bf_scaffold_18722 3 1504 bp 32.65 12.35 68.22
SCNpilot_expt_300_bf_scaffold_28163
Species: Spirosoma linguale (50%)
2 1079 bp 33.27 12.33 98.15
SCNpilot_expt_300_bf_scaffold_5249 3 3098 bp 48.87 12.32 92.48
SCNpilot_expt_300_bf_scaffold_28571
Species: Candidatus Accumulibacter sp. BA-93 (50%)
2 1062 bp 71.75 12.29 100.28
SCNpilot_expt_300_bf_scaffold_3363
Species: Leifsonia aquatica (50%)
4 4924 bp 65.58 12.28 79.26
SCNpilot_expt_300_bf_scaffold_17002
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1596 bp 66.85 12.27 100.19
SCNpilot_expt_300_bf_scaffold_19859 1 1445 bp 31.83 12.16 8.72
SCNpilot_expt_300_bf_scaffold_35505 2 1531 bp 32.66 12.13 96.60
SCNpilot_expt_300_bf_scaffold_18172 1 1531 bp 30.05 12.13 43.70
SCNpilot_expt_300_bf_scaffold_6509
Species: Comamonas testosteroni (50%)
6 4862 bp 67.22 12.08 92.43
SCNpilot_expt_300_bf_scaffold_505
Species: Alicycliphilus denitrificans (50%)
20 21919 bp 69.44 12.06 94.11
SCNpilot_expt_300_bf_scaffold_24437
Species: Adineta vaga (100%)
1 1244 bp 31.11 11.90 92.85
SCNpilot_expt_300_bf_scaffold_29788
Species: Sphingomonas sanxanigenens (100%)
1 1013 bp 65.15 11.89 99.80
SCNpilot_expt_300_bf_scaffold_5703
Class: Gammaproteobacteria (66.67%)
6 4378 bp 64.71 11.81 92.10
SCNpilot_expt_300_bf_scaffold_36085
Species: Rhodanobacter spathiphylli (50%)
2 1352 bp 68.20 11.70 83.43
SCNpilot_expt_300_bf_scaffold_1877
Species: Acidovorax ebreus (50%)
10 7878 bp 64.47 11.69 91.43
SCNpilot_expt_300_bf_scaffold_23069 1 1300 bp 26.38 11.58 8.54
Displaying items 251-300 of 24308 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.