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SCNpilot_expt_300_bf_scaffold_6203_7

Organism: SCNPILOT_EXPT_300_BF_Rotifera_33_5

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3
Location: 5009..5578

Top 3 Functional Annotations

Value Algorithm Source
Lipopolysaccharide-induced tumor necrosis factor-alpha factor (Fragment) n=2 Tax=Hydra vulgaris RepID=T2M789_HYDVU similarity UNIREF
DB: UNIREF100
  • Identity: 44.6
  • Coverage: 83.0
  • Bit_score: 82
  • Evalue 4.80e-13
similar to LPS-induced TNF-alpha factor similarity KEGG
DB: KEGG
  • Identity: 44.6
  • Coverage: 83.0
  • Bit_score: 82
  • Evalue 1.50e-13
Lipopolysaccharide-induced tumor necrosis factor-alpha factor {ECO:0000313|EMBL:CDG67795.1}; Flags: Fragment;; TaxID=6087 species="Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; similarity UNIPROT
DB: UniProtKB
  • Identity: 44.6
  • Coverage: 83.0
  • Bit_score: 82
  • Evalue 6.70e-13

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Taxonomy

Hydra vulgaris → Hydra → Anthoathecata → Hydroidolina → Cnidaria → Metazoa

Sequences

DNA sequence
Length: 570
ATGGCTTCTTACCAATTTTCAGTTTGATTAAGTAATAAAGAAGAAAAAAAGACGTTTTTTTCTTTGTATTTATTTAAGCAACGAAGGAATACGATTTTCTATTCTCATGAAAATCAAATTCGAAATTCATTCTTTCATTTACATTCGAAACAAAGACAAAATAATATGAACACAGCACCTCCGCCTTACAGTAAGAAGAAGAAAAAAAAGCAAAAAATTTTTGTTTGTCTTCATTTTCATTCACAATATTTTTTATCTTATTACAAAATAGGTGAAAAAATTCCTTTTCAACAGGCACCATTAGTGTCTGTGGTACAGCCGGTGTATTCTGCAGTATCACCGACCATTACCGGCGACTTTCCTGTTCAATGCGTGTGTCCACATTGTCGAACACAAGTTGTGACACGAACTGAAAAAACAGTCGGCCTTCTCTCTTGGATTATTTGTATTGCACTATTTTTCACTTTAATGTGGGTTTGCTGTTTCATACCATTTTGTGTTGATGCTTGCAAAGTTGGTCGAATAGATATTGTATGTCTTTCTCTTCATCTTTCTTTTTTTTTGTTCTAG
PROTEIN sequence
Length: 190
MASYQFSV*LSNKEEKKTFFSLYLFKQRRNTIFYSHENQIRNSFFHLHSKQRQNNMNTAPPPYSKKKKKKQKIFVCLHFHSQYFLSYYKIGEKIPFQQAPLVSVVQPVYSAVSPTITGDFPVQCVCPHCRTQVVTRTEKTVGLLSWIICIALFFTLMWVCCFIPFCVDACKVGRIDIVCLSLHLSFFLF*