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SCNPILOT_EXPT_300_BF_Rotifera_33_5

SCNPILOT_EXPT_300_BF_unknown_33_5
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 4.61 Longest contig: 15.36 Kbp Bin length: 6.58 Mbp GC content: 32.61 %
Contigs count: 993 Features count: 7781 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3

Description

from TS-ESOM

Displaying items 651-700 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_1015 11 8591 bp 33.34 4.38 49.17
SCNpilot_expt_300_bf_scaffold_4136 8 6880 bp 29.42 4.38 38.76
SCNpilot_expt_300_bf_scaffold_5302
Domain: Metazoa (54.55%)
11 8595 bp 31.59 4.38 53.51
SCNpilot_expt_300_bf_scaffold_5136
Domain: Metazoa (60%)
10 6531 bp 33.90 4.38 61.60
SCNpilot_expt_300_bf_scaffold_3641 12 8479 bp 32.15 4.38 45.68
SCNpilot_expt_300_bf_scaffold_5435
Species: Clonorchis sinensis (50%)
2 5155 bp 28.17 4.38 73.62
SCNpilot_expt_300_bf_scaffold_4300 7 5392 bp 34.51 4.38 73.22
SCNpilot_expt_300_bf_scaffold_1735
Species: Adineta vaga (72.73%)
11 5621 bp 33.09 4.38 62.60
SCNpilot_expt_300_bf_scaffold_1483 14 6300 bp 32.63 4.38 72.29
SCNpilot_expt_300_bf_scaffold_2081
Domain: Metazoa (62.5%)
16 7829 bp 32.90 4.39 54.76
SCNpilot_expt_300_bf_scaffold_5125 8 5890 bp 30.22 4.39 45.79
SCNpilot_expt_300_bf_scaffold_7061 6 5150 bp 32.74 4.39 41.30
SCNpilot_expt_300_bf_scaffold_7613 9 6123 bp 31.75 4.39 51.74
SCNpilot_expt_300_bf_scaffold_9057 5 5258 bp 35.39 4.39 68.24
SCNpilot_expt_300_bf_scaffold_2028 5 7241 bp 30.89 4.40 18.48
SCNpilot_expt_300_bf_scaffold_1522 6 6167 bp 32.03 4.40 27.63
SCNpilot_expt_300_bf_scaffold_4968 7 5015 bp 34.58 4.40 52.46
SCNpilot_expt_300_bf_scaffold_1928 5 7186 bp 32.95 4.40 44.50
SCNpilot_expt_300_bf_scaffold_3629 6 5756 bp 32.52 4.40 42.84
SCNpilot_expt_300_bf_scaffold_4286 4 5082 bp 32.29 4.40 65.47
SCNpilot_expt_300_bf_scaffold_4034 9 5073 bp 31.72 4.40 52.04
SCNpilot_expt_300_bf_scaffold_1203 5 7420 bp 34.62 4.40 40.43
SCNpilot_expt_300_bf_scaffold_6241 4 6103 bp 31.25 4.40 36.23
SCNpilot_expt_300_bf_scaffold_2070
Domain: Metazoa (66.67%)
9 5011 bp 32.21 4.41 51.49
SCNpilot_expt_300_bf_scaffold_3277 7 5574 bp 39.94 4.41 84.98
SCNpilot_expt_300_bf_scaffold_2901 7 8708 bp 32.50 4.41 42.48
SCNpilot_expt_300_bf_scaffold_1367 10 9114 bp 32.82 4.41 57.41
SCNpilot_expt_300_bf_scaffold_4728 6 5638 bp 33.74 4.41 48.79
SCNpilot_expt_300_bf_scaffold_2172
Phylum: Chordata (50%)
4 5690 bp 34.06 4.41 31.00
SCNpilot_expt_300_bf_scaffold_3134 12 11260 bp 32.10 4.41 41.06
SCNpilot_expt_300_bf_scaffold_2736
Domain: Metazoa (50%)
8 6199 bp 32.84 4.41 64.80
SCNpilot_expt_300_bf_scaffold_9811 6 5349 bp 32.55 4.41 43.52
SCNpilot_expt_300_bf_scaffold_2539
Domain: Metazoa (60%)
5 5057 bp 29.01 4.42 40.04
SCNpilot_expt_300_bf_scaffold_5069 7 5230 bp 34.28 4.42 72.91
SCNpilot_expt_300_bf_scaffold_4226 4 5171 bp 32.72 4.42 31.50
SCNpilot_expt_300_bf_scaffold_1421
Order: Poales (53.85%)
13 7438 bp 34.28 4.42 79.13
SCNpilot_expt_300_bf_scaffold_3140 7 8348 bp 32.62 4.42 49.20
SCNpilot_expt_300_bf_scaffold_1492
Domain: Metazoa (57.14%)
14 10232 bp 32.76 4.42 37.27
SCNpilot_expt_300_bf_scaffold_2778 4 6704 bp 33.92 4.42 31.24
SCNpilot_expt_300_bf_scaffold_2029 17 11491 bp 32.99 4.43 42.76
SCNpilot_expt_300_bf_scaffold_1779 13 11784 bp 34.15 4.43 40.81
SCNpilot_expt_300_bf_scaffold_8705
Species: Philodina roseola (50%)
4 5212 bp 33.71 4.43 85.53
SCNpilot_expt_300_bf_scaffold_9974 13 6296 bp 31.80 4.43 50.27
SCNpilot_expt_300_bf_scaffold_4538 13 5837 bp 33.08 4.43 50.57
SCNpilot_expt_300_bf_scaffold_1962
Species: Adineta vaga (57.14%)
7 6686 bp 31.42 4.43 75.29
SCNpilot_expt_300_bf_scaffold_1469 9 6342 bp 33.49 4.43 49.05
SCNpilot_expt_300_bf_scaffold_2523 9 6909 bp 33.61 4.43 37.00
SCNpilot_expt_300_bf_scaffold_1262
Domain: Metazoa (53.85%)
13 10170 bp 33.86 4.44 54.34
SCNpilot_expt_300_bf_scaffold_7407 9 7684 bp 32.05 4.44 30.45
SCNpilot_expt_300_bf_scaffold_1619 17 12539 bp 31.90 4.44 43.88
Displaying items 651-700 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.