ggKbase home page
Advanced Search
Search Help

SCNPILOT_EXPT_300_BF_Rotifera_33_5

SCNPILOT_EXPT_300_BF_unknown_33_5
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 4.61 Longest contig: 15.36 Kbp Bin length: 6.58 Mbp GC content: 32.61 %
Contigs count: 993 Features count: 7781 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3

Description

from TS-ESOM

Displaying items 851-900 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_6972 5 5866 bp 29.73 4.79 53.14
SCNpilot_expt_300_bf_scaffold_6233 6 5502 bp 30.28 4.79 40.51
SCNpilot_expt_300_bf_scaffold_1505 5 6222 bp 32.50 4.80 72.66
SCNpilot_expt_300_bf_scaffold_1327 11 6844 bp 33.28 4.80 43.13
SCNpilot_expt_300_bf_scaffold_2121 15 8623 bp 33.18 4.80 51.04
SCNpilot_expt_300_bf_scaffold_3633 4 7423 bp 29.88 4.80 19.28
SCNpilot_expt_300_bf_scaffold_6188 10 6374 bp 34.04 4.80 49.61
SCNpilot_expt_300_bf_scaffold_3722 9 5102 bp 29.24 4.82 67.91
SCNpilot_expt_300_bf_scaffold_2043 7 5052 bp 31.10 4.82 31.71
SCNpilot_expt_300_bf_scaffold_2463 9 5363 bp 32.18 4.82 40.89
SCNpilot_expt_300_bf_scaffold_7353 8 5153 bp 32.14 4.82 47.39
SCNpilot_expt_300_bf_scaffold_4051 6 6151 bp 30.76 4.82 22.73
SCNpilot_expt_300_bf_scaffold_1736 7 5620 bp 34.82 4.82 83.49
SCNpilot_expt_300_bf_scaffold_6024 7 5244 bp 33.12 4.83 52.40
SCNpilot_expt_300_bf_scaffold_2601 12 8524 bp 30.54 4.83 70.11
SCNpilot_expt_300_bf_scaffold_4198 11 5612 bp 35.58 4.83 70.19
SCNpilot_expt_300_bf_scaffold_2480 13 9306 bp 30.82 4.83 49.32
SCNpilot_expt_300_bf_scaffold_1830
Domain: Metazoa (50%)
6 5443 bp 31.55 4.84 73.91
SCNpilot_expt_300_bf_scaffold_3033 15 12012 bp 32.47 4.85 59.59
SCNpilot_expt_300_bf_scaffold_3079 6 5844 bp 32.61 4.85 54.31
SCNpilot_expt_300_bf_scaffold_2186 16 10397 bp 33.38 4.85 57.51
SCNpilot_expt_300_bf_scaffold_2803 9 6141 bp 33.04 4.86 67.71
SCNpilot_expt_300_bf_scaffold_4621 7 5826 bp 34.48 4.87 72.04
SCNpilot_expt_300_bf_scaffold_1070
Domain: Metazoa (55.56%)
9 8244 bp 32.28 4.87 28.71
SCNpilot_expt_300_bf_scaffold_2493 11 7530 bp 31.16 4.87 49.84
SCNpilot_expt_300_bf_scaffold_2843 3 6892 bp 29.90 4.88 55.80
SCNpilot_expt_300_bf_scaffold_3043
Domain: Metazoa (72.73%)
11 7722 bp 32.35 4.88 48.21
SCNpilot_expt_300_bf_scaffold_2528 10 10873 bp 30.07 4.89 34.32
SCNpilot_expt_300_bf_scaffold_1863 6 6436 bp 29.40 4.91 56.08
SCNpilot_expt_300_bf_scaffold_1376 5 6652 bp 30.82 4.91 24.13
SCNpilot_expt_300_bf_scaffold_4019
Domain: Metazoa (77.78%)
9 5168 bp 33.03 4.91 75.12
SCNpilot_expt_300_bf_scaffold_4705
Domain: Metazoa (57.14%)
7 6281 bp 32.38 4.92 61.18
SCNpilot_expt_300_bf_scaffold_1879
Domain: Metazoa (75%)
8 5351 bp 37.38 4.93 68.90
SCNpilot_expt_300_bf_scaffold_1706 9 5692 bp 34.12 4.94 62.82
SCNpilot_expt_300_bf_scaffold_2670 6 6700 bp 34.27 4.95 28.48
SCNpilot_expt_300_bf_scaffold_901
Domain: Metazoa (77.78%)
9 10277 bp 30.60 4.96 47.41
SCNpilot_expt_300_bf_scaffold_1652 10 8351 bp 30.57 4.96 42.68
SCNpilot_expt_300_bf_scaffold_3145 7 5668 bp 32.69 4.96 52.19
SCNpilot_expt_300_bf_scaffold_2809
Domain: Metazoa (85.71%)
7 5810 bp 33.39 4.97 47.66
SCNpilot_expt_300_bf_scaffold_1851
Domain: Metazoa (54.55%)
11 5399 bp 33.04 4.97 69.18
SCNpilot_expt_300_bf_scaffold_1432 4 6467 bp 35.70 4.97 48.89
SCNpilot_expt_300_bf_scaffold_1640 7 5849 bp 32.89 4.98 72.47
SCNpilot_expt_300_bf_scaffold_977 8 8876 bp 32.15 4.98 86.15
SCNpilot_expt_300_bf_scaffold_1467
Domain: Metazoa (83.33%)
6 6347 bp 31.95 4.98 32.71
SCNpilot_expt_300_bf_scaffold_10702 9 5632 bp 33.29 4.99 44.37
SCNpilot_expt_300_bf_scaffold_2420 4 8445 bp 31.63 4.99 38.76
SCNpilot_expt_300_bf_scaffold_5568 7 5669 bp 33.48 5.00 24.50
SCNpilot_expt_300_bf_scaffold_1506
Domain: Metazoa (52.94%)
17 7870 bp 31.45 5.01 60.15
SCNpilot_expt_300_bf_scaffold_4209 8 6850 bp 33.81 5.02 42.22
SCNpilot_expt_300_bf_scaffold_2656 9 7700 bp 33.68 5.02 58.99
Displaying items 851-900 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.