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SCNPILOT_EXPT_300_BF_Rotifera_33_5

SCNPILOT_EXPT_300_BF_unknown_33_5
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 4.61 Longest contig: 15.36 Kbp Bin length: 6.58 Mbp GC content: 32.61 %
Contigs count: 993 Features count: 7781 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 8 / 55 MC: 3 BSCG 4 / 51 MC: 1 ASCG 5 / 38 MC: 3

Description

from TS-ESOM

Displaying items 201-250 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_1914
Domain: Metazoa (80%)
5 5271 bp 33.18 4.62 83.49
SCNpilot_expt_300_bf_scaffold_1052 7 11099 bp 30.80 4.61 30.49
SCNpilot_expt_300_bf_scaffold_2346 6 5720 bp 32.31 4.61 28.11
SCNpilot_expt_300_bf_scaffold_6189 4 5005 bp 32.11 4.61 21.82
SCNpilot_expt_300_bf_scaffold_3188 5 6639 bp 31.18 4.61 24.90
SCNpilot_expt_300_bf_scaffold_877 12 10096 bp 31.85 4.60 38.24
SCNpilot_expt_300_bf_scaffold_1148 7 7746 bp 30.74 4.60 24.52
SCNpilot_expt_300_bf_scaffold_2453 3 6439 bp 29.51 4.60 20.92
SCNpilot_expt_300_bf_scaffold_4532
Domain: Metazoa (50%)
8 7098 bp 33.50 4.60 40.96
SCNpilot_expt_300_bf_scaffold_1494 6 6269 bp 33.99 4.60 88.91
SCNpilot_expt_300_bf_scaffold_2827
Domain: Metazoa (66.67%)
9 5960 bp 33.46 4.59 53.71
SCNpilot_expt_300_bf_scaffold_3309 9 5903 bp 33.22 4.59 43.15
SCNpilot_expt_300_bf_scaffold_4486 7 6562 bp 32.49 4.59 35.20
SCNpilot_expt_300_bf_scaffold_4530 6 6886 bp 29.96 4.59 17.95
SCNpilot_expt_300_bf_scaffold_1727 6 5635 bp 36.13 4.59 42.91
SCNpilot_expt_300_bf_scaffold_4488 6 5540 bp 30.42 4.58 35.63
SCNpilot_expt_300_bf_scaffold_8308 8 5757 bp 32.99 4.58 59.61
SCNpilot_expt_300_bf_scaffold_12377 4 5106 bp 30.32 4.57 15.80
SCNpilot_expt_300_bf_scaffold_1400
Domain: Metazoa (60%)
10 6587 bp 33.22 4.57 59.57
SCNpilot_expt_300_bf_scaffold_8749 7 6760 bp 30.37 4.57 38.83
SCNpilot_expt_300_bf_scaffold_3162 5 5332 bp 30.80 4.57 42.48
SCNpilot_expt_300_bf_scaffold_2857 11 7428 bp 33.39 4.56 51.66
SCNpilot_expt_300_bf_scaffold_4723 7 5004 bp 31.00 4.56 78.84
SCNpilot_expt_300_bf_scaffold_2654 13 6875 bp 31.99 4.56 54.15
SCNpilot_expt_300_bf_scaffold_2662 12 7427 bp 32.87 4.56 52.59
SCNpilot_expt_300_bf_scaffold_4354 5 5244 bp 31.77 4.55 43.82
SCNpilot_expt_300_bf_scaffold_1034 11 8433 bp 31.28 4.55 46.28
SCNpilot_expt_300_bf_scaffold_1573 7 6007 bp 34.16 4.55 69.17
SCNpilot_expt_300_bf_scaffold_1591
Domain: Metazoa (50%)
8 5958 bp 31.07 4.55 44.11
SCNpilot_expt_300_bf_scaffold_1608 9 5905 bp 34.99 4.55 63.66
SCNpilot_expt_300_bf_scaffold_3306 7 6067 bp 33.25 4.55 33.53
SCNpilot_expt_300_bf_scaffold_1895
Domain: Metazoa (50%)
4 5299 bp 33.14 4.55 48.63
SCNpilot_expt_300_bf_scaffold_3089 9 5570 bp 34.27 4.55 47.61
SCNpilot_expt_300_bf_scaffold_1687 4 5739 bp 31.85 4.55 30.21
SCNpilot_expt_300_bf_scaffold_1757 3 5571 bp 31.81 4.55 33.87
SCNpilot_expt_300_bf_scaffold_2552 4 5754 bp 32.38 4.54 41.14
SCNpilot_expt_300_bf_scaffold_2330
Domain: Metazoa (58.33%)
12 6961 bp 31.68 4.54 47.19
SCNpilot_expt_300_bf_scaffold_6140 13 7748 bp 36.00 4.54 61.91
SCNpilot_expt_300_bf_scaffold_1921 6 5250 bp 34.19 4.54 48.91
SCNpilot_expt_300_bf_scaffold_5189 10 5582 bp 35.04 4.54 51.22
SCNpilot_expt_300_bf_scaffold_3183 7 5032 bp 33.92 4.54 60.93
SCNpilot_expt_300_bf_scaffold_1744 5 6586 bp 30.47 4.54 35.17
SCNpilot_expt_300_bf_scaffold_15432 3 5643 bp 32.61 4.54 20.20
SCNpilot_expt_300_bf_scaffold_2825
Domain: Metazoa (50%)
8 5876 bp 32.22 4.53 45.90
SCNpilot_expt_300_bf_scaffold_3243 8 8760 bp 30.75 4.53 33.25
SCNpilot_expt_300_bf_scaffold_1374
Domain: Metazoa (60%)
10 6653 bp 34.30 4.53 67.46
SCNpilot_expt_300_bf_scaffold_1748
Domain: Metazoa (50%)
6 8537 bp 30.77 4.53 38.30
SCNpilot_expt_300_bf_scaffold_1751
Phylum: Chordata (50%)
8 5595 bp 35.32 4.53 48.42
SCNpilot_expt_300_bf_scaffold_7389
Domain: Metazoa (50%)
6 5813 bp 35.35 4.53 37.36
SCNpilot_expt_300_bf_scaffold_10360
Domain: Metazoa (66.67%)
6 5440 bp 30.39 4.52 54.32
Displaying items 201-250 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.