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SCNpilot_expt_300_bf_scaffold_769_4

Organism: SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 3 ASCG 11 / 38 MC: 1
Location: 3567..4130

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGL9_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 68.8
  • Coverage: 176.0
  • Bit_score: 243
  • Evalue 1.20e-61
DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:EJL30929.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; similarity UNIPROT
DB: UniProtKB
  • Identity: 68.8
  • Coverage: 176.0
  • Bit_score: 243
  • Evalue 1.70e-61
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 67.2
  • Coverage: 180.0
  • Bit_score: 241
  • Evalue 2.30e-61

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Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
GTGNNNNNNNNNNNNNNNNAGCGGCTCTCCCCGCTCGAGCGCGGGGCGTTCCTGCTCCATGACGTGTTCGGCGAGAGCTTCGACGATGTCGCGGAGAGCCTCGGGCGAGATTCCGCCGCGTGCCGCCAGCTCGCGGCCCGCGCCCGCGAACATGTCCGCGCCGGCAAGCCGCGCTTCCCGGTCGAGCGCGCGCACGGGCTGGAGATCGCGCAGGTCTTCTTCGCCGCCTCGCGCAGCGGGGAGATCGGCCGGCTGGGCGCGATGCTGGCGGAGGATGTAAGCCTCTATTCGGACGGCGGCGGCAAGCGCCCGGCGGCGGCCCGCGTCATGCTCGGCTGGGGCGAGGTCACGCGCACCTTCGCCGCGATCGCCCGCCTGACGCACGGTCGGACGGGCGAGTTGATCCGCTACGCCTATGTCAACGGCCTGCCCGGCTTCGTCACGCGCGAGCCGGACGGCATCCTCCAGACCACTGCCCTGCTGATCGAGAACGACCGGGTCAGGGCGATCTATGTGATGCGCAACCCCGACAAATTGCGCCATCTGGAAGGGCGGCTGAATTAG
PROTEIN sequence
Length: 188
VXXXXXXRLSPLERGAFLLHDVFGESFDDVAESLGRDSAACRQLAARAREHVRAGKPRFPVERAHGLEIAQVFFAASRSGEIGRLGAMLAEDVSLYSDGGGKRPAAARVMLGWGEVTRTFAAIARLTHGRTGELIRYAYVNGLPGFVTREPDGILQTTALLIENDRVRAIYVMRNPDKLRHLEGRLN*