ggKbase home page
Advanced Search
Search Help

SCNPILOT_EXPT_300_BF_Bacteroidetes_41_3

In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy: Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 3.20 Longest contig: 4.31 Kbp Bin length: 356.48 Kbp GC content: 40.74 %
Contigs count: 238 Features count: 540 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 12 / 55 BSCG 14 / 51 ASCG 4 / 38 MC: 1

Description

from comparison: SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16

Displaying items 151-200 of 238 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_17102
Species: BJP_IG2102_Bacteroidetes_40_9 (50%)
2 1591 bp 37.52 4.10 68.64
SCNpilot_expt_300_bf_scaffold_18600
Species: Sphingobacterium sp. 21 (50%)
2 1510 bp 44.90 3.49 73.91
SCNpilot_expt_300_bf_scaffold_27112
Species: GWF2_Bacteroidetes_38_335_curated (50%)
2 1126 bp 46.54 2.23 99.91
SCNpilot_expt_300_bf_scaffold_28954
Species: Pedobacter heparinus (50%)
2 1048 bp 35.69 4.55 75.29
SCNpilot_expt_300_bf_scaffold_20131
Species: Chitinophaga pinensis (50%)
2 1432 bp 41.83 3.68 97.00
SCNpilot_expt_300_bf_scaffold_15340
Species: Pedobacter sp. BAL39 (50%)
2 1701 bp 42.92 2.66 93.12
SCNpilot_expt_300_bf_scaffold_19340
Species: Niastella koreensis (50%)
2 1474 bp 45.32 2.89 97.69
SCNpilot_expt_300_bf_scaffold_21477
Species: Alcanivorax sp. PN-3 (50%)
2 1368 bp 38.52 2.57 76.97
SCNpilot_expt_300_bf_scaffold_8486
Species: Niastella koreensis (50%)
2 2406 bp 42.19 2.71 84.04
SCNpilot_expt_300_bf_scaffold_14286
Species: Schleiferia thermophila (50%)
2 1779 bp 40.98 2.26 64.08
SCNpilot_expt_300_bf_scaffold_25828
Species: Chitinophaga pinensis (50%)
2 1185 bp 46.24 3.18 92.91
SCNpilot_expt_300_bf_scaffold_23924
Species: Bacteroides massiliensis (50%)
2 1267 bp 46.88 3.57 98.97
SCNpilot_expt_300_bf_scaffold_21229
Species: Chitinophaga pinensis (50%)
2 1379 bp 40.83 2.73 82.67
SCNpilot_expt_300_bf_scaffold_20150
Species: Chryseobacterium soli (50%)
2 1431 bp 44.10 3.16 83.86
SCNpilot_expt_300_bf_scaffold_13543
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 1837 bp 33.91 3.96 93.74
SCNpilot_expt_300_bf_scaffold_16507
Species: Chitinophaga pinensis (50%)
2 1626 bp 34.19 4.94 59.96
SCNpilot_expt_300_bf_scaffold_29349
Species: Sphingobacterium paucimobilis (50%)
2 1031 bp 44.33 2.43 92.82
SCNpilot_expt_300_bf_scaffold_24999
Species: Tamlana nanhaiensis (50%)
2 1220 bp 46.23 3.29 95.41
SCNpilot_expt_300_bf_scaffold_26742
Species: Flavobacterium indicum (50%)
2 1143 bp 42.17 2.42 98.95
SCNpilot_expt_300_bf_scaffold_16773 2 1610 bp 39.63 2.96 89.25
SCNpilot_expt_300_bf_scaffold_23435
Species: Dyadobacter fermentans (50%)
2 1286 bp 41.91 3.12 79.78
SCNpilot_expt_300_bf_scaffold_21251
Species: Providencia alcalifaciens (50%)
2 1378 bp 44.78 2.55 97.53
SCNpilot_expt_300_bf_scaffold_24756
Species: Flammeovirgaceae bacterium 311 (50%)
2 1230 bp 45.85 2.04 99.76
SCNpilot_expt_300_bf_scaffold_27676
Species: Pseudopedobacter saltans (50%)
2 1101 bp 45.23 3.19 97.28
SCNpilot_expt_300_bf_scaffold_19892
Species: Niabella soli (50%)
2 2219 bp 40.06 2.71 62.06
SCNpilot_expt_300_bf_scaffold_19392
Species: Niabella soli (50%)
2 1471 bp 37.05 2.22 36.91
SCNpilot_expt_300_bf_scaffold_27690
Species: Pedobacter sp. NL19 (50%)
2 1100 bp 44.27 2.74 79.09
SCNpilot_expt_300_bf_scaffold_24269
Species: Chitinophaga pinensis (50%)
2 1252 bp 43.37 2.81 96.33
SCNpilot_expt_300_bf_scaffold_13849
Species: Chitinophaga pinensis (50%)
2 1812 bp 40.51 3.05 91.39
SCNpilot_expt_300_bf_scaffold_17434 2 1572 bp 41.98 3.51 96.95
SCNpilot_expt_300_bf_scaffold_18418
Species: Niabella soli (50%)
2 1518 bp 44.27 3.64 86.56
SCNpilot_expt_300_bf_scaffold_13340
Species: Sphingobacterium spiritivorum (50%)
2 1854 bp 38.57 3.52 73.14
SCNpilot_expt_300_bf_scaffold_22836
Species: Chitinophaga pinensis (100%)
2 1310 bp 39.77 2.68 84.50
SCNpilot_expt_300_bf_scaffold_24023
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 1262 bp 42.63 4.18 89.38
SCNpilot_expt_300_bf_scaffold_12770
Species: Flavihumibacter solisilvae (50%)
2 1902 bp 40.80 3.43 74.29
SCNpilot_expt_300_bf_scaffold_19411
Species: Chitinophaga pinensis (50%)
2 1470 bp 44.69 3.41 87.76
SCNpilot_expt_300_bf_scaffold_29919
Species: Flavobacterium rivuli (50%)
2 1007 bp 44.29 2.74 99.50
SCNpilot_expt_300_bf_scaffold_24544
Species: Pedobacter kyungheensis (50%)
2 1239 bp 42.29 3.65 81.60
SCNpilot_expt_300_bf_scaffold_28017 2 1085 bp 39.82 2.78 49.77
SCNpilot_expt_300_bf_scaffold_29927
Species: Chryseobacterium sp. StRB126 (100%)
2 1007 bp 49.35 2.99 99.21
SCNpilot_expt_300_bf_scaffold_27208
Species: Hymenobacter swuensis (50%)
2 1122 bp 45.72 2.46 95.72
SCNpilot_expt_300_bf_scaffold_25906
Species: Chitinophaga pinensis (50%)
2 1182 bp 38.92 2.55 70.56
SCNpilot_expt_300_bf_scaffold_8316
Species: Pedobacter sp. NL19 (50%)
2 2435 bp 30.64 3.20 85.75
SCNpilot_expt_300_bf_scaffold_13364
Species: Pedobacter antarcticus (50%)
2 1851 bp 40.19 4.88 65.80
SCNpilot_expt_300_bf_scaffold_29688
Species: Chryseobacterium taiwanense (100%)
1 1017 bp 47.10 3.46 99.71
SCNpilot_expt_300_bf_scaffold_28552 1 1063 bp 45.16 1.89 99.91
SCNpilot_expt_300_bf_scaffold_29691
Species: Mucilaginibacter paludis (100%)
1 1017 bp 39.72 2.96 99.71
SCNpilot_expt_300_bf_scaffold_29437
Species: Fibrella aestuarina (100%)
1 1027 bp 38.66 2.44 75.95
SCNpilot_expt_300_bf_scaffold_22626
Species: GWF2_Lentisphaerae_50_93_curated (100%)
1 1319 bp 42.84 3.24 70.28
SCNpilot_expt_300_bf_scaffold_25685
Species: Chryseobacterium solincola (100%)
1 1191 bp 41.56 5.06 63.98
Displaying items 151-200 of 238 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.