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SCNPILOT_EXPT_300_BF_Bacteroidetes_41_3

In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy: Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 3.20 Longest contig: 4.31 Kbp Bin length: 356.48 Kbp GC content: 40.74 %
Contigs count: 238 Features count: 540 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 12 / 55 BSCG 14 / 51 ASCG 4 / 38 MC: 1

Description

from comparison: SCNPILOT_EXPT_750_BF_Bacteroidetes_42_16

Displaying items 101-150 of 238 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_19725
Species: Pedobacter antarcticus (100%)
2 1452 bp 42.08 3.46 99.38
SCNpilot_expt_300_bf_scaffold_21863
Species: Haliscomenobacter hydrossis (50%)
2 1351 bp 40.41 2.60 72.39
SCNpilot_expt_300_bf_scaffold_4903
Species: [Clostridium] sordellii (50%)
2 3208 bp 31.08 3.52 99.88
SCNpilot_expt_300_bf_scaffold_23547
Species: Prevotella bivia (50%)
2 1281 bp 42.54 2.35 99.06
SCNpilot_expt_300_bf_scaffold_28083
Species: Dyadobacter fermentans (50%)
2 1082 bp 43.81 2.78 69.32
SCNpilot_expt_300_bf_scaffold_37210
Species: Microscilla marina (50%)
2 1466 bp 43.04 3.25 95.98
SCNpilot_expt_300_bf_scaffold_13676
Species: Sphingobacterium spiritivorum (50%)
2 1827 bp 44.01 2.75 92.12
SCNpilot_expt_300_bf_scaffold_19740
Species: Flavobacterium aquatile (50%)
2 1452 bp 36.23 2.94 47.93
SCNpilot_expt_300_bf_scaffold_27269
Species: Dyadobacter fermentans (50%)
2 1119 bp 40.57 2.92 61.13
SCNpilot_expt_300_bf_scaffold_27526
Species: Myroides odoratimimus (50%)
2 1108 bp 46.48 2.72 89.89
SCNpilot_expt_300_bf_scaffold_14176
Species: Elizabethkingia meningoseptica (50%)
2 1787 bp 35.59 2.39 82.76
SCNpilot_expt_300_bf_scaffold_29995
Species: Flavobacterium johnsoniae (50%)
2 1004 bp 47.61 3.00 86.35
SCNpilot_expt_300_bf_scaffold_28604
Species: Flavihumibacter petaseus (50%)
2 1061 bp 40.72 3.55 79.17
SCNpilot_expt_300_bf_scaffold_13430
Species: Solitalea canadensis (50%)
2 1846 bp 37.32 4.35 68.26
SCNpilot_expt_300_bf_scaffold_29487
Species: Niastella koreensis (50%)
2 1026 bp 38.69 3.91 77.78
SCNpilot_expt_300_bf_scaffold_13945
Species: Flavihumibacter petaseus (50%)
2 1805 bp 43.10 3.89 90.08
SCNpilot_expt_300_bf_scaffold_25467
Species: Zhouia amylolytica (50%)
2 1200 bp 44.08 3.77 90.75
SCNpilot_expt_300_bf_scaffold_18521
Species: Sphingobacterium sp. PM2-P1-29 (100%)
2 1514 bp 38.64 2.65 87.78
SCNpilot_expt_300_bf_scaffold_24125
Species: Sphingobacterium sp. ACCC 05744 (50%)
2 1258 bp 45.07 3.99 85.61
SCNpilot_expt_300_bf_scaffold_24893
Species: Cecembia lonarensis (50%)
2 1225 bp 44.65 3.28 86.45
SCNpilot_expt_300_bf_scaffold_22686
Species: Chryseobacterium sp. StRB126 (50%)
2 1316 bp 42.63 5.34 76.37
SCNpilot_expt_300_bf_scaffold_22175
Species: Pedobacter heparinus (50%)
2 1337 bp 38.52 2.25 85.27
SCNpilot_expt_300_bf_scaffold_14969
Species: Pontibacter sp. BAB1700 (50%)
2 1728 bp 38.66 2.76 49.48
SCNpilot_expt_300_bf_scaffold_19260
Species: Chitinophaga pinensis (50%)
2 1477 bp 42.72 2.38 83.28
SCNpilot_expt_300_bf_scaffold_29765
Species: Chryseobacterium gleum (50%)
2 1014 bp 44.97 3.96 98.22
SCNpilot_expt_300_bf_scaffold_14467
Species: Flavobacterium aquatile (50%)
2 1764 bp 41.16 3.70 88.61
SCNpilot_expt_300_bf_scaffold_22189
Species: Tatlockia micdadei (50%)
2 1337 bp 46.60 2.44 89.98
SCNpilot_expt_300_bf_scaffold_18543
Species: Leadbetterella byssophila (50%)
2 1512 bp 44.18 3.65 92.46
SCNpilot_expt_300_bf_scaffold_25246
Species: Chryseobacterium sp. StRB126 (50%)
2 1210 bp 39.34 3.53 92.73
SCNpilot_expt_300_bf_scaffold_29016
Species: Peptoniphilus sp. BV3C26 (50%)
2 1045 bp 39.23 2.40 88.71
SCNpilot_expt_300_bf_scaffold_25762
Species: Chitinophaga pinensis (50%)
2 1188 bp 29.63 2.54 63.38
SCNpilot_expt_300_bf_scaffold_13990
Species: Dyadobacter fermentans (50%)
2 1801 bp 41.59 2.65 90.12
SCNpilot_expt_300_bf_scaffold_23095
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 1300 bp 39.77 4.83 49.85
SCNpilot_expt_300_bf_scaffold_16189
Species: Haliscomenobacter hydrossis (50%)
2 1646 bp 49.03 4.12 99.33
SCNpilot_expt_300_bf_scaffold_17326
Species: Nonlabens dokdonensis (50%)
2 1579 bp 41.86 3.18 98.04
SCNpilot_expt_300_bf_scaffold_13491
Species: Sphingobacterium sp. PM2-P1-29 (50%)
2 1842 bp 36.48 3.00 93.81
SCNpilot_expt_300_bf_scaffold_27083
Species: Flavobacterium beibuense (50%)
2 1127 bp 44.90 3.79 90.77
SCNpilot_expt_300_bf_scaffold_22732
Species: Niabella soli (50%)
2 1314 bp 41.55 2.29 71.92
SCNpilot_expt_300_bf_scaffold_29042
Species: Niastella koreensis (50%)
2 1044 bp 44.25 3.61 92.82
SCNpilot_expt_300_bf_scaffold_29043
Species: Solitalea canadensis (50%)
2 1044 bp 44.54 2.89 98.85
SCNpilot_expt_300_bf_scaffold_29813
Species: Epilithonimonas lactis (50%)
2 1012 bp 41.50 4.46 75.59
SCNpilot_expt_300_bf_scaffold_28677
Species: Cyclobacterium marinum (50%)
2 1058 bp 47.73 1.90 92.16
SCNpilot_expt_300_bf_scaffold_19309
Species: Flavihumibacter solisilvae (50%)
2 1475 bp 43.39 3.06 85.63
SCNpilot_expt_300_bf_scaffold_23633
Species: Chitinophaga pinensis (50%)
2 1278 bp 38.18 3.93 92.72
SCNpilot_expt_300_bf_scaffold_20884
Species: Riemerella phage RAP44 (50%)
2 1395 bp 38.64 3.24 81.94
SCNpilot_expt_300_bf_scaffold_23381
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1288 bp 41.15 4.29 77.80
SCNpilot_expt_300_bf_scaffold_28173
Species: Flavihumibacter sp. ZG627 (50%)
2 1079 bp 41.89 2.33 82.85
SCNpilot_expt_300_bf_scaffold_22496
Species: [Clostridium] clariflavum (50%)
2 1324 bp 33.76 2.84 96.75
SCNpilot_expt_300_bf_scaffold_25803
Species: Flavihumibacter sp. ZG627 (50%)
2 1186 bp 46.21 3.39 95.62
SCNpilot_expt_300_bf_scaffold_23645
Species: Chryseobacterium luteum (50%)
2 1278 bp 37.72 2.36 86.62
Displaying items 101-150 of 238 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.