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SCNpilot_expt_300_bf_scaffold_1003_6

Organism: SCNPILOT_EXPT_300_BF_Burkholderiales_67_13

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 3846..5330

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 61.2
  • Coverage: 510.0
  • Bit_score: 569
  • Evalue 9.60e-160
RNA polymerase sigma-54 factor n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JHY4_BURVG similarity UNIREF
DB: UNIREF100
  • Identity: 61.2
  • Coverage: 510.0
  • Bit_score: 569
  • Evalue 3.40e-159
  • rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepaci similarity UNIPROT
DB: UniProtKB
  • Identity: 61.2
  • Coverage: 510.0
  • Bit_score: 569
  • Evalue 4.80e-159

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Taxonomy

Burkholderia vietnamiensis → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1485
ATGCTCAAACCCGGACTCCAACTTCGCACCTCCCAGCACTTGGCGCTGACGCCGGCGCTGCAACAGTCGATCAAGCTGCTGCAATTGTCGACGCTCGAACTCGAACACGAAATCGAGCAGATCCTGCAGGAGAACCCGCTGCTCGAACGCGAGGACGATCCCGTGGCGGCCACGCTGCGGGTCGACGCCGACGGCAGCATGCACGCGGCCACGCCCGCCGCGCCGGAAGCCGACGCCGAACCGGGCGGCGAGGCCATGGAGGCCCCCTCGCCGGCCGACGCCGGCGATGCGCCGGACCTGCCCGACATGCCCGACATGCCGGAGCTGCACCGCCCCGGCGGCGAGCACGACGACGACACCGCACCACAACTCGCGGCGCCCGACGCCTCGCTGCGCGAGCACCTGCTGAGCCAGCTCGCGCTCACGCAGGCCACGCCGCGCGATGCGGCGCTGGTGACGGCGCTGGTCGACGAACTGGACGACAACGGCTACCTGGGCGTGTCGCTGGAAGAACTGGCCGCGCTGTTCCCGCCCGAGCTGGAGATCGACGCCGACGAACTGCGTTCGGCGTTGGGGCTGCTCCAGTCCTTCGATCCGGCCGGCGTGGGTGCCCGCAACATCTCCGAATGCCTGTGCCTGCAATTGCGCGTGCCGGACCTCGATTGCCTGCCAGAGGCCCGCGATGCCGAGGTGCTGGCGCTGGCCCGCCAGATCTCCGCCCAGCATCTGCCGCTGCTGGGCGCGCGGGACTACGCCAAGCTGCGCAAGGCGCTGGGCTGCAACGACGACCAGCTGCGCGCGGCCCAGAGCCTGATCCGCCGGCTCGACCCGCGGCCCGGTTCGCGCTACTCGTCGCCCGCCGCGGACTACGTCGTGCCCGACGTGATCGTGCGCAAGGCCGGCACCCAGTGGCGCGCGATGCTCAACGGCGAAGCCATGCCGCGGCTGCGCATCAACCAGATGTACGCGCAGATCCTGAAATCGGAGCGCAGCTCGGCCCATCCCGGGCTGTCCTCGCAGTTGCAGGAGGCGCGCTGGCTGATACGCAATGTCCAGCAACGCTTCGACACCATCCTGCGCGTGGCCCAGGCCATCATCGATCGGCAGCAGGGTTTCCTCAACCATGGCGAGGTCGCCATGCGGCCTCTTGTATTACGCGAAATAGCAGATACACTAGGCTTGCATGAGTCGACGATCTCACGCGTCACTACGCAGAAATACATGCTCACCCCGCTGGGGACTTTCGAGCTGAAGTATTTCTTCGGCAGCCACGTCGCCACGGAGACCGGAGGAGCGGCATCGTCCACAGCGATCCGTGCGCTGATCAAGCAACTCATTGGTGCGGAGGACCCTACCCAGCCACTATCCGACAGCCAACTTGCGCAGACGCTGGGGGAGCAGGGTATCGTCGTGGCCCGCCGCACGGTGGCCAAATACCGCGAAGCGCTCAAGATTCCGCCGGTTTCCCTGCGTAAGAGCATCTAG
PROTEIN sequence
Length: 495
MLKPGLQLRTSQHLALTPALQQSIKLLQLSTLELEHEIEQILQENPLLEREDDPVAATLRVDADGSMHAATPAAPEADAEPGGEAMEAPSPADAGDAPDLPDMPDMPELHRPGGEHDDDTAPQLAAPDASLREHLLSQLALTQATPRDAALVTALVDELDDNGYLGVSLEELAALFPPELEIDADELRSALGLLQSFDPAGVGARNISECLCLQLRVPDLDCLPEARDAEVLALARQISAQHLPLLGARDYAKLRKALGCNDDQLRAAQSLIRRLDPRPGSRYSSPAADYVVPDVIVRKAGTQWRAMLNGEAMPRLRINQMYAQILKSERSSAHPGLSSQLQEARWLIRNVQQRFDTILRVAQAIIDRQQGFLNHGEVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPLGTFELKYFFGSHVATETGGAASSTAIRALIKQLIGAEDPTQPLSDSQLAQTLGEQGIVVARRTVAKYREALKIPPVSLRKSI*