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SCNPILOT_EXPT_300_BF_Devosia_62_6

In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_300_bf_UNK

Properties

Avg. coverage: 5.82 Longest contig: 32.58 Kbp Bin length: 3.13 Mbp GC content: 62.24 %
Contigs count: 534 Features count: 3633 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 45 / 55 MC: 3 BSCG 45 / 51 MC: 5 ASCG 11 / 38

Description

from comparison: SCNPILOT_EXPT_750_BF_Rhizobiales_63_37

Displaying items 451-500 of 534 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_23804
Species: Devosia soli (50%)
2 1271 bp 64.52 6.71 83.79
SCNpilot_expt_300_bf_scaffold_26100
Species: Devosia soli (50%)
2 1174 bp 61.33 5.56 100.17
SCNpilot_expt_300_bf_scaffold_21626
Species: Devosia chinhatensis (100%)
2 1362 bp 61.45 3.32 87.44
SCNpilot_expt_300_bf_scaffold_20293
Species: Pelagibacterium halotolerans (50%)
2 1424 bp 64.75 5.11 61.94
SCNpilot_expt_300_bf_scaffold_11991
Species: Devosia geojensis (50%)
2 1973 bp 53.52 7.76 100.20
SCNpilot_expt_300_bf_scaffold_17783
Species: Devosia chinhatensis (50%)
2 1554 bp 61.52 5.49 83.01
SCNpilot_expt_300_bf_scaffold_7712
Species: Devosia soli (100%)
2 2541 bp 66.39 5.93 84.89
SCNpilot_expt_300_bf_scaffold_15248
Species: Devosia chinhatensis (50%)
2 2563 bp 59.54 5.19 70.82
SCNpilot_expt_300_bf_scaffold_23560
Species: Devosia chinhatensis (50%)
2 1281 bp 64.17 7.05 100.23
SCNpilot_expt_300_bf_scaffold_8642
Species: Devosia sp. LC5 (50%)
2 2383 bp 64.25 4.42 88.63
SCNpilot_expt_300_bf_scaffold_12349
Species: Devosia riboflavina (50%)
2 1942 bp 63.13 6.20 92.53
SCNpilot_expt_300_bf_scaffold_18007
Species: Devosia geojensis (50%)
2 1540 bp 63.31 5.54 97.40
SCNpilot_expt_300_bf_scaffold_10151
Species: Devosia riboflavina (50%)
2 2174 bp 59.89 5.77 38.22
SCNpilot_expt_300_bf_scaffold_17026
Species: Devosia chinhatensis (50%)
2 1595 bp 62.07 4.72 88.03
SCNpilot_expt_300_bf_scaffold_27802
Species: Devosia riboflavina (100%)
2 1094 bp 60.15 3.44 98.72
SCNpilot_expt_300_bf_scaffold_19762
Species: Devosia chinhatensis (100%)
2 1450 bp 62.14 8.31 96.83
SCNpilot_expt_300_bf_scaffold_13445
Species: Hyphomicrobium denitrificans (50%)
2 1845 bp 63.58 5.17 88.62
SCNpilot_expt_300_bf_scaffold_12107
Species: Devosia chinhatensis (50%)
2 1963 bp 60.57 5.24 75.04
SCNpilot_expt_300_bf_scaffold_11249
Species: Devosia chinhatensis (50%)
2 2046 bp 61.44 4.91 92.67
SCNpilot_expt_300_bf_scaffold_21147
Species: Devosia riboflavina (100%)
2 1383 bp 64.71 4.17 100.00
SCNpilot_expt_300_bf_scaffold_27574
Species: Devosia chinhatensis (100%)
2 1105 bp 60.18 5.68 88.78
SCNpilot_expt_300_bf_scaffold_13984
Species: Devosia chinhatensis (50%)
2 1802 bp 65.65 7.52 94.56
SCNpilot_expt_300_bf_scaffold_14992
Species: Devosia riboflavina (50%)
2 1726 bp 63.27 5.24 75.43
SCNpilot_expt_300_bf_scaffold_16948
Species: Devosia riboflavina (50%)
2 1599 bp 66.67 5.96 101.88
SCNpilot_expt_300_bf_scaffold_22204
Species: Devosia chinhatensis (100%)
2 1336 bp 63.47 4.32 78.59
SCNpilot_expt_300_bf_scaffold_12133
Species: Ensifer adhaerens (50%)
2 1961 bp 63.90 6.14 93.17
SCNpilot_expt_300_bf_scaffold_12914
Species: Devosia soli (100%)
2 2458 bp 61.72 5.82 75.92
SCNpilot_expt_300_bf_scaffold_11035
Species: Devosia chinhatensis (50%)
2 2073 bp 62.33 5.57 90.16
SCNpilot_expt_300_bf_scaffold_11547
Species: Devosia chinhatensis (100%)
2 2016 bp 64.19 4.48 100.89
SCNpilot_expt_300_bf_scaffold_15573
Species: Novosphingobium malaysiense (50%)
2 1687 bp 61.71 5.95 100.12
SCNpilot_expt_300_bf_scaffold_24442
Species: Devosia riboflavina (50%)
2 1244 bp 62.06 4.04 98.87
SCNpilot_expt_300_bf_scaffold_18079
Species: Devosia riboflavina (50%)
2 1536 bp 61.20 6.37 89.26
SCNpilot_expt_300_bf_scaffold_26444
Species: Devosia soli (50%)
2 1157 bp 62.06 6.29 88.16
SCNpilot_expt_300_bf_scaffold_18598
Species: Devosia psychrophila (50%)
2 1510 bp 61.06 4.49 99.14
SCNpilot_expt_300_bf_scaffold_10491
Species: Devosia limi (50%)
2 2136 bp 64.70 3.88 99.44
SCNpilot_expt_300_bf_scaffold_23141
Species: Devosia sp. LC5 (50%)
2 1298 bp 61.02 4.83 83.44
SCNpilot_expt_300_bf_scaffold_26970
Species: Devosia chinhatensis (100%)
2 1132 bp 60.78 5.32 70.23
SCNpilot_expt_300_bf_scaffold_19848
Species: GWA2_Burkholderiales_64_37_curated (50%)
2 1446 bp 61.69 5.90 90.25
SCNpilot_expt_300_bf_scaffold_9487
Species: Devosia chinhatensis (100%)
2 2264 bp 65.64 6.43 99.78
SCNpilot_expt_300_bf_scaffold_27127
Species: Devosia insulae (50%)
2 1125 bp 64.00 6.02 88.27
SCNpilot_expt_300_bf_scaffold_12192
Species: Rhizobium sp. UR51a (50%)
2 1956 bp 60.07 4.62 84.66
SCNpilot_expt_300_bf_scaffold_23417
Species: Streptomycetaceae bacterium MP113-05 (50%)
2 1286 bp 62.29 5.07 58.09
SCNpilot_expt_300_bf_scaffold_16509
Species: Vibrio cholerae (50%)
2 1626 bp 65.56 3.86 100.18
SCNpilot_expt_300_bf_scaffold_20670
Species: Devosia sp. LC5 (50%)
2 1405 bp 61.85 4.82 99.29
SCNpilot_expt_300_bf_scaffold_27142
Species: Devosia limi (50%)
2 1124 bp 66.10 4.91 99.82
SCNpilot_expt_300_bf_scaffold_28726
Species: Devosia riboflavina (100%)
2 1056 bp 64.77 6.42 93.47
SCNpilot_expt_300_bf_scaffold_14305
Species: Devosia chinhatensis (50%)
2 1778 bp 61.70 4.24 92.63
SCNpilot_expt_300_bf_scaffold_10779
Species: Devosia limi (50%)
2 2100 bp 64.57 6.22 90.86
SCNpilot_expt_300_bf_scaffold_18134
Species: Devosia sp. LC5 (50%)
2 1533 bp 58.45 4.91 78.28
SCNpilot_expt_300_bf_scaffold_24760
Species: Ochrobactrum anthropi (50%)
2 1230 bp 58.94 6.12 90.49
Displaying items 451-500 of 534 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.