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SCNpilot_expt_300_bf_scaffold_3577_8

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(5870..6433)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q8_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 80.7
  • Coverage: 187.0
  • Bit_score: 328
  • Evalue 5.00e-87
  • rbh
HTH-type transcriptional regulator LeuO {ECO:0000313|EMBL:CEG09059.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis similarity UNIPROT
DB: UniProtKB
  • Identity: 80.7
  • Coverage: 187.0
  • Bit_score: 328
  • Evalue 7.00e-87
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 38.9
  • Coverage: 190.0
  • Bit_score: 164
  • Evalue 3.50e-38

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Taxonomy

Afipia felis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGCCGCGCTTCGTCGACTGGCTGGCGCAGGTGGCGCCCAACATCAAGGTGCAGATCCGGCCCGAACTCGGCCGTTTCATTCAGGCCGAATTGCGCGAGGGCGCGATCGATCTGGCGATGGACTACTTCCGGATTCGCGGCGACGAATTCCACCATGTCCACGCAATGGACGAACATCTGGTCTCGATGGTGCGGCAGGATCACCCGACCATCGGCGACCATCTCAGTCTCGACGATTTCATCACTGTGCCGCACGTCATGCTGACCCAGGACAAGCCGGTGGTGGATACGGTGCTGAAAGCGCACGGCCTCACCCGCAACATCGCGCTGCAGGTGCCGCACTTTCTGTCGATGCCGCTGATCGTGCAGAAGACCAATTTCATCTGCACGCTGCCCAAGCGCATGGCGCTGGTGTATGCCGACTTCTTCCGCACCAAGGTACTGAAGACGCCGCTCGATTTCCCTCACATCCCGATCTATTTCATGTGGCACCAGTCGGTCGACGGCGATCCCGGCCACAAATGGCTGCGCAATGCGCTCCATGAATTGTGCCAGCGGCTGTGA
PROTEIN sequence
Length: 188
MPRFVDWLAQVAPNIKVQIRPELGRFIQAELREGAIDLAMDYFRIRGDEFHHVHAMDEHLVSMVRQDHPTIGDHLSLDDFITVPHVMLTQDKPVVDTVLKAHGLTRNIALQVPHFLSMPLIVQKTNFICTLPKRMALVYADFFRTKVLKTPLDFPHIPIYFMWHQSVDGDPGHKWLRNALHELCQRL*