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SCNpilot_expt_300_bf_scaffold_7577_4

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: 2364..2564

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3F9_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 77.6
  • Coverage: 67.0
  • Bit_score: 106
  • Evalue 1.40e-20
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFI52489.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Af similarity UNIPROT
DB: UniProtKB
  • Identity: 77.6
  • Coverage: 67.0
  • Bit_score: 106
  • Evalue 2.00e-20
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 67.0
  • Bit_score: 102
  • Evalue 4.50e-20

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 201
ATGCAGGACAATAAATTTCTGACCGAGCATTTCGAGGCGAGCCGCGCGCGTCTGCGCGCCGTGGCCTACCGGATGCTCGGCTCGCGCAGCGAGGCGGACGATGCCGTGCAGGAGGCCTGGCTGCGGCTGAGCCGCGCCGACACCGGCGAGGGTCAGAATCTCGGCGGCTGGCTGACCACCGTGGGGGCGCGCACCTGCCTC
PROTEIN sequence
Length: 67
MQDNKFLTEHFEASRARLRAVAYRMLGSRSEADDAVQEAWLRLSRADTGEGQNLGGWLTTVGARTCL