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SCNpilot_expt_300_bf_scaffold_8542_9

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: 5323..5964

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S4 n=2 Tax=Oligotropha carboxidovorans RepID=RS4_OLICO similarity UNIREF
DB: UNIREF100
  • Identity: 94.6
  • Coverage: 205.0
  • Bit_score: 397
  • Evalue 7.60e-108
  • rbh
rpsD; 30S ribosomal protein S4 similarity KEGG
DB: KEGG
  • Identity: 94.6
  • Coverage: 205.0
  • Bit_score: 397
  • Evalue 2.10e-108
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.1
  • Coverage: 205.0
  • Bit_score: 397
  • Evalue 1.10e-107

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 642
ATGGCTATGCACAACGAGGACGCGATGACTAAGCGCAGTGAGGCGAAGTATAAAATCGATCGCCGTATGGGCCAGAACATCTGGGGCCGCCCGAAGAGCCCCGTCAACAAGCGTGAATACGGCCCGGGCCAGCACGGCCAGCGCCGCAAGGGCAAGCTCTCCGACTTCGGCACGCAGCTCCGCGCCAAGCAGAAGCTCAAGGGCTATTACGCCAACATCTCCGAGCGTCAGTTCTACGCCGTCTACGTCGAGGCGACCCGTCTCAAGGGCGACTCCGGCGAAAATCTGATCGGCCTGCTCGAGCGCCGCCTCGACACGGTGGTCTATCGCGCCAAGTTCGTGCCGACCATGTTCGCCGCGCGCCAGTTCATCAACCACGGCCACGTCAAGGTGAACGGCAAGCGCGTCAACATCGCCAGCTACAAGGTGAAGGTCGGCGACGTCATCGAGGTCAAGGACGCCTCCAAGCAGCTCGCTCTGGTGCTCGAAGCCAACCAGCTCCCCGAGCGCGACACGCCGGACTTCCTCGAAGTCGATCACGGCAAGCAGACCGCGAAGTTCGTCCGCGTGCCGGGCCTGTCGGAAGTGCCGTTCCCGGTGCAGATGGAACCGCACCTGATCATCGAATTCTATTCGCGCTGA
PROTEIN sequence
Length: 214
MAMHNEDAMTKRSEAKYKIDRRMGQNIWGRPKSPVNKREYGPGQHGQRRKGKLSDFGTQLRAKQKLKGYYANISERQFYAVYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVPTMFAARQFINHGHVKVNGKRVNIASYKVKVGDVIEVKDASKQLALVLEANQLPERDTPDFLEVDHGKQTAKFVRVPGLSEVPFPVQMEPHLIIEFYSR*