ggKbase home page

SCNpilot_expt_300_bf_scaffold_10978_4

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: 2941..3399

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L4 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAE3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 96.7
  • Coverage: 153.0
  • Bit_score: 297
  • Evalue 1.00e-77
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.7
  • Coverage: 153.0
  • Bit_score: 297
  • Evalue 1.40e-77
rplD; 50S ribosomal protein L4 similarity KEGG
DB: KEGG
  • Identity: 93.5
  • Coverage: 153.0
  • Bit_score: 286
  • Evalue 3.80e-75

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 459
ATGGAATTGAACGTCACCACTCTTGAGGGTAAGGCCGCCGGTTCGGTCAAGCTGTCGGACGAGATCTTCGGTCTCGAGCCGCGCACGGACATTATCCAGCGCGTCGTGAACTGGCAGCTCGCCAAGCGTCAGGCCGGTACGCACAAGGCCAAGGGCCGTGCTGAAGTCTGGCGCACCGGCAAGAAGATGTACAAGCAGAAGGGCACCGGTGGCGCCCGTCACGGCTCGGCCCGCGTGCCGCAGTTCCGCGGCGGTGGTCGCGCGTTCGGCCCGGTGGTGCGCAGCCATGCGCACGACCTGCCGAAGAAGGTTCGCGCGCTCGGCCTGCGTCATGCTCTGTCGGCCAAGGCGAAGGATGGCGGTCTTGTCGTGATCGACAATACCGAGCTGAAGGACGCCAAGACCAAGGCGCTGATCGGCCACTTCTCGGGGCTCGGCCTGACCAGCGCGCTGATCATC
PROTEIN sequence
Length: 153
MELNVTTLEGKAAGSVKLSDEIFGLEPRTDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTGKKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDGGLVVIDNTELKDAKTKALIGHFSGLGLTSALII