ggKbase home page

SCNpilot_expt_300_bf_scaffold_12110_2

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(125..1282)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_0100 similarity UNIPROT
DB: UniProtKB
  • Identity: 74.0
  • Coverage: 377.0
  • Bit_score: 522
  • Evalue 5.20e-145
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P534_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 74.0
  • Coverage: 377.0
  • Bit_score: 522
  • Evalue 3.70e-145
  • rbh
mraW; S-adenosyl-methyltransferase MraW similarity KEGG
DB: KEGG
  • Identity: 72.4
  • Coverage: 377.0
  • Bit_score: 509
  • Evalue 7.00e-142

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1158
ATGCAGACATGCTGTTTGCGACGCGATTTCGCCGAAAGGCGCCTCTGGAGAGGCCGCTTGCCGGGCGAGCGTCGCGGCGACGGGCCGCGCGCCGCGCGGACACATCATGTCTCCTTTCGCTGGCCGGTGCTGCGCCGGCCGCCCGGGTGCGCCATGACCCAGGACGACCGGCCGCGCCATATCTCCGTTCTCGGTCGCGAGGCCGTGGCGTTTTTGGCGCCTCGCGCCGGCGGTGTTTATGTCGATGCGACCTTCGGGGCCGGGGGGTATAGCCGCACCATTCTGGGCGCGCCCGGCACCCGGGTCATCGCCATCGACCGCGACCGCACCGCGATCGCCGAAGGCTTCGATCTGGTCGATCGTTCGGACGGCCGTCTTACTCTGGTCGAGGACCGCTTTTCGAATCTGGCGCAGGTCTGCGCCGATCAGGGCGTGCCGCAGGTCGACGGCGTGGTGATGGATGTCGGCGTCTCCTCGATGCAACTCGACCGCGCCGAGCGGGGCTTTTCGTTCCGCAATGACGGCCCGCTCGACATGCGGATGGGCCAGGATGGTCCGAGCGCCGCCGACGTGGTGGCGAGCGCGTCGGAAACCGATCTGGCCAATGTCATCTATATCTTCGGCGAGGAGCGCCATTCGCGCGCGGTGGCGCGAGCTATCGTCAAGGCGCGCGGCGAGGCGCCGATCACCACCACACGCGCGCTTGCCGACATCGTCTCGCGCGTGGTGCGCAGCAAGCCCGGCGAGATCCATCCGGCGACCCGCACGTTTCAGGCGCTGCGCATTTTCGTCAATGAGGAACTCGACGAACTGCAAACCGCGCTGACGGCGTCCGAGCGGGTGCTGAAGCCGGGCGGGCGGCTGGTGGTGGTCTCGTTTCATTCGCTGGAAGACCGCATCGTCAAGAATTTCATCGGCGCACGCAGCAAGAGCGGTGGCGGATCGCGGCATCTGCCGGTCGCCGCGCAGGCCGCGCCGAGTTTCATGAGCCTGACCAAGCGGCCGGTGGTTGCCGACGAGGCTGAGATCGCCGCCAATCCGCGCGCGCGCTCGGCCAAGCTGCGCGCGGCGGAGCGTACCGATGCGCCGGCTCATGCCGAGGATGCCGCTTTCGGATGGCCGATTCTGGCGAACGTGATGCGGGGAGGGCGGTCGTGA
PROTEIN sequence
Length: 386
MQTCCLRRDFAERRLWRGRLPGERRGDGPRAARTHHVSFRWPVLRRPPGCAMTQDDRPRHISVLGREAVAFLAPRAGGVYVDATFGAGGYSRTILGAPGTRVIAIDRDRTAIAEGFDLVDRSDGRLTLVEDRFSNLAQVCADQGVPQVDGVVMDVGVSSMQLDRAERGFSFRNDGPLDMRMGQDGPSAADVVASASETDLANVIYIFGEERHSRAVARAIVKARGEAPITTTRALADIVSRVVRSKPGEIHPATRTFQALRIFVNEELDELQTALTASERVLKPGGRLVVVSFHSLEDRIVKNFIGARSKSGGGSRHLPVAAQAAPSFMSLTKRPVVADEAEIAANPRARSAKLRAAERTDAPAHAEDAAFGWPILANVMRGGRS*