ggKbase home page

SCNpilot_expt_300_bf_scaffold_21963_2

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(305..697)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 130.0
  • Bit_score: 252
  • Evalue 2.60e-64
DNA-directed RNA polymerase subunit omega n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6W3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 130.0
  • Bit_score: 252
  • Evalue 1.90e-64
rnpO; DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 96.9
  • Coverage: 130.0
  • Bit_score: 250
  • Evalue 2.60e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 393
ATGGCGCGCGTCACTGTTGAGGATTGTATTGACAAGGTCGACAACCGGTTCGACCTCGTTCTGCTGGCCGCCCACCGCGCCCGCATGATTTCGTCCGGATCGCCGCTGACGATTGATCGCGATAACGACAAGAATCCGGTCGTCTCGCTGCGGGAAATCGCCGAAACCACCATTTCTCCCGAGGATCTGAAGGAAGAACTGGTCCATTCGCTGCAGAAGTTCGTCGAAGTGGACGAGCCCGAGCCCGATACGGTTCCTTTGATCGGTTCCGCTGGCGCATCGGTGGATGCGGACGACACCGAGGTGTCTGTCGAGCGTATGACCGAGGAAGAACTGCTCAAGGGCTTGGAAGGCCTCGCGCCGCCGGAAGAGCAGCCCGAAGAGGACGAATAA
PROTEIN sequence
Length: 131
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSPLTIDRDNDKNPVVSLREIAETTISPEDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVSVERMTEEELLKGLEGLAPPEEQPEEDE*