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SCNpilot_expt_300_bf_scaffold_18268_3

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(1863..3326)

Top 3 Functional Annotations

Value Algorithm Source
Putative multidrug resistance protein B (Drug efflux transporter) n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N400_RHOPA similarity UNIREF
DB: UNIREF100
  • Identity: 81.7
  • Coverage: 498.0
  • Bit_score: 817
  • Evalue 9.20e-234
  • rbh
MFS transporter {ECO:0000313|EMBL:KIZ38911.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris similarity UNIPROT
DB: UniProtKB
  • Identity: 82.1
  • Coverage: 496.0
  • Bit_score: 826
  • Evalue 2.80e-236
emrB1; EmrB/QacA subfamily drug resistance transporter similarity KEGG
DB: KEGG
  • Identity: 81.9
  • Coverage: 498.0
  • Bit_score: 818
  • Evalue 1.20e-234

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1464
GTGTTCGGCATGTTCATGTCGATCCTGGACATTCAGATCGTCTCGGCATCGCTCGCGGAAATTCAGGCCGGTCTGTCGGCAAGCGCCAGCGAAGTGGCGTGGGTGCAAACCGCCTATCTGATCGCCGAAGTCATCGCCATTCCGCTGTCCGGCTTCCTGTCGCGCGCCTTCGGTACGCGGTTGCTGTTCGCCATTTCGGCGGCTGGCTTCACCGGCGCCAGCCTGATGTGCGGCTTCACCTCGACCATCGAGCAGATGATCGTCTGGCGCGCGCTGCAGGGCTTCCTCGGCGCCGGCATGATCCCGACGGTGTTCGCATCGGCTTACACCGTATTTCCGCGCTCGAAATTCAATATCGTCGGGCCGATCATCGGACTTGTCGCGACGCTGGCGCCGACCATCGGGCCGACGGTGGGCGGTTACATCACCGACATGATGTCATGGCACTGGCTGTTCTTCATCAACATCTTCCCCGGCGTCGGCATTACAATCGGGGTCTTGGCGCTGGTCGATTTCGACGAGCCACATCTCGAATTGCTGGATCATTTCGACTGGTGGGGCCTCGGCTTCATGGCCGCCTTCCTCGGCTCGCTGGAATATGTGCTCGAGGAANNNNNGATCCTCACGTTTGCAATCGTTGGCGCGGTGGCGGCGGTGGCATTTTTCTGGCGCGTGCTGACCGCGCGCGAGCCGATCGTCGATCTTCGCACCTTCACCAACCGCAACTTCGCGCTGGGCTGTTCGTTCTCGTTCTGCATCGGCATCGGACTTTACGGGCTGACCTATCTTTACCCGCGTTATCTCGCCGAGGTGCGCGGCTACAGCGCACTGATGATCGGCGAGACGATGTTCGTCTCCGGCGTCGCGATGTTTTGCACGGCGCCGATTGTCGGCCGCTTGATGCAGAAGATCGATATGCGCTTGCTGATCGCGCTGGGGTTGATCCTGTTCGCTGCCGGCTCGTGGGAGATGACCTGGGTCACCAAGGATTTCGATTTCAACGAGTTGTTCGTGCCGCAAATCCTGCGCGGCGTCGGCATGATGCTGGCGATGGTGCCGGTCAACACCATTTCGCTGGGAACGCTGCCGCCGGAACGCGTCAAGAATGCATCGGGGCTGTTCAACCTGACGCGCAATCTCGGCGGCGCGGTGGGGCTGGCGCTGATCAACACGGTGCTCGATCACCGCACCGATCTGCATATCTCGCGGCTGCATGATTCCGTGACGTGGGGCAATGCCAAGGCCGTCGAAACGCTGAACATGTTCGCGCAGAAATTCCAGGGCATGGGCGACGCATCGCTGATGGCGCTGAAGCAACTGTCGCAGATCGTGCACCGGCAGGCGGCGGTGATGAGCTACGGCGATTCGTTTTTCATCCTGACGATGTTCTATCTCGGTCTCAGCCTGTTCGTCGTGCTGCTCGACAAGCCGGCGGCGCTTGGCGCCCCGCCGGGCGGACATTGA
PROTEIN sequence
Length: 488
VFGMFMSILDIQIVSASLAEIQAGLSASASEVAWVQTAYLIAEVIAIPLSGFLSRAFGTRLLFAISAAGFTGASLMCGFTSTIEQMIVWRALQGFLGAGMIPTVFASAYTVFPRSKFNIVGPIIGLVATLAPTIGPTVGGYITDMMSWHWLFFINIFPGVGITIGVLALVDFDEPHLELLDHFDWWGLGFMAAFLGSLEYVLEEXXILTFAIVGAVAAVAFFWRVLTAREPIVDLRTFTNRNFALGCSFSFCIGIGLYGLTYLYPRYLAEVRGYSALMIGETMFVSGVAMFCTAPIVGRLMQKIDMRLLIALGLILFAAGSWEMTWVTKDFDFNELFVPQILRGVGMMLAMVPVNTISLGTLPPERVKNASGLFNLTRNLGGAVGLALINTVLDHRTDLHISRLHDSVTWGNAKAVETLNMFAQKFQGMGDASLMALKQLSQIVHRQAAVMSYGDSFFILTMFYLGLSLFVVLLDKPAALGAPPGGH*