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SCNpilot_expt_300_bf_scaffold_228_curated_105

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(112707..113222)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AY81_DELSC similarity UNIREF
DB: UNIREF100
  • Identity: 86.9
  • Coverage: 168.0
  • Bit_score: 284
  • Evalue 9.90e-74
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 86.9
  • Coverage: 168.0
  • Bit_score: 284
  • Evalue 3.10e-74
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEF90498.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.9
  • Coverage: 168.0
  • Bit_score: 284
  • Evalue 1.40e-73

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Taxonomy

Delftia sp. Cs1-4 → Delftia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGCCCGCCGCCGAAACCGCCCTGCACCGCGACATCACCGCCCTCTACACCACCCACCACGGCTGGCTGCAGGGCTGGCTGCGCCGCCGGCTGAACCATGCCGGCGACGCGGCCGACCTGGCGCAGGACACCTTCGTGCGCCTGCTCACCGCCCCTGCCGCGCCGGCCGAAGCCCCGCTGCGCGAGCCGCGCGCCTACCTGGCCACGGTGGCGCGGCGGCTGCTGCTCAACCACCTGCGCCGCCAGTCGCTGGAGCAGGCCTACCTGCAGGCGCTGGCCGCGCTGCCCGCGCCCCAGGCGCCGTCGCCCGAGCAGCAACTGGCGATCCTGCAGGCGCTGCAGGAGATCGACGCCATGCTCGACGGCCTGCCGCCCAAGGTGCGCGCGGTCTTCATCCTGTCCCAGGTCGAGGGGCTGACCTATGCGGCCATCGCCGAGGAGCTGGGCATGGGCCTGCGTTCGGTCAAGCGCTACATGGCCCAGGCCATGGCCGAATGCATTCTGCTGGCGCCATGA
PROTEIN sequence
Length: 172
MPAAETALHRDITALYTTHHGWLQGWLRRRLNHAGDAADLAQDTFVRLLTAPAAPAEAPLREPRAYLATVARRLLLNHLRRQSLEQAYLQALAALPAPQAPSPEQQLAILQALQEIDAMLDGLPPKVRAVFILSQVEGLTYAAIAEELGMGLRSVKRYMAQAMAECILLAP*