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SCNpilot_expt_500_bf_step10_UNK

In projects: SCNPILOT_EXPT_500_BF_STEP10
Displaying items 401-450 of 13467 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_30999
Species: Niastella koreensis (100%)
2 1147 bp 38.97 2.40 99.65
SCNpilot_expt_500_bf_scaffold_21199
Species: Tumebacillus flagellatus (50%)
2 1670 bp 52.22 2.40 87.84
SCNpilot_expt_500_bf_scaffold_17834
Order: Rhizobiales (100%)
3 1976 bp 65.69 2.40 98.53
SCNpilot_expt_500_bf_scaffold_21224
Species: Thauera sp. 27 (50%)
2 1669 bp 66.33 2.40 91.67
SCNpilot_expt_500_bf_scaffold_33045
Species: Devosia sp. DDB001 (50%)
2 1040 bp 69.13 2.40 100.67
SCNpilot_expt_500_bf_scaffold_33057 1 1040 bp 39.52 2.40 11.83
SCNpilot_expt_500_bf_scaffold_28717
Species: Bacillus thuringiensis (50%)
2 1252 bp 37.54 2.40 97.52
SCNpilot_expt_500_bf_scaffold_28736 3 1251 bp 39.01 2.40 81.06
SCNpilot_expt_500_bf_scaffold_24516
Species: Chitinophaga pinensis (75%)
4 1459 bp 34.96 2.40 71.97
SCNpilot_expt_500_bf_scaffold_28761
Species: Methylobacterium aquaticum (50%)
2 1250 bp 61.60 2.40 100.08
SCNpilot_expt_500_bf_scaffold_24531
Species: Beijerinckia indica (100%)
1 1458 bp 61.66 2.40 99.79
SCNpilot_expt_500_bf_scaffold_40353 2 1251 bp 68.35 2.40 66.43
SCNpilot_expt_500_bf_scaffold_42302 3 1252 bp 67.81 2.40 71.17
SCNpilot_expt_500_bf_scaffold_44124
Order: Rhizobiales (66.67%)
3 1251 bp 65.39 2.40 104.32
SCNpilot_expt_500_bf_scaffold_40983
Species: Herpetosiphon aurantiacus (50%)
2 1248 bp 50.24 2.40 88.70
SCNpilot_expt_500_bf_scaffold_28911
Species: Niastella koreensis (100%)
1 1243 bp 41.27 2.41 99.92
SCNpilot_expt_500_bf_scaffold_28932
Species: RBG_16_Chloroflexi_57_9_curated (50%)
2 1243 bp 56.96 2.41 84.71
SCNpilot_expt_500_bf_scaffold_41578
Order: Burkholderiales (66.67%)
3 1452 bp 58.61 2.41 76.86
SCNpilot_expt_500_bf_scaffold_24986
Species: Acidovorax sp. KKS102 (60%)
5 2079 bp 64.94 2.41 100.29
SCNpilot_expt_500_bf_scaffold_17866
Domain: Bacteria (66.67%)
3 1972 bp 53.85 2.41 88.24
SCNpilot_expt_500_bf_scaffold_33599
Species: R_Alphaproteobacteria_66_14 (50%)
2 1657 bp 67.35 2.41 102.47
SCNpilot_expt_500_bf_scaffold_33119
Species: Sphingobium sp. SYK-6 (100%)
1 1037 bp 75.41 2.41 99.81
SCNpilot_expt_500_bf_scaffold_28829
Species: GWC2_Geobacteraceae_53_11_curated (50%)
2 1247 bp 52.77 2.41 71.93
SCNpilot_expt_500_bf_scaffold_32553
Species: Elizabethkingia anophelis (100%)
2 1663 bp 45.04 2.41 96.69
SCNpilot_expt_500_bf_scaffold_24603 2 1454 bp 38.17 2.41 103.37
SCNpilot_expt_500_bf_scaffold_28838
Species: Niastella koreensis (50%)
2 1867 bp 39.80 2.41 99.14
SCNpilot_expt_500_bf_scaffold_28841
Genus: Rhizobium (66.67%)
3 1246 bp 63.88 2.41 50.80
SCNpilot_expt_500_bf_scaffold_28855 2 1246 bp 35.71 2.41 32.99
SCNpilot_expt_500_bf_scaffold_26688 3 1345 bp 39.48 2.42 71.15
SCNpilot_expt_500_bf_scaffold_31248
Genus: Bacillus (66.67%)
3 1135 bp 59.30 2.42 94.10
SCNpilot_expt_500_bf_scaffold_29009
Class: Alphaproteobacteria (66.67%)
3 1239 bp 63.52 2.42 80.15
SCNpilot_expt_500_bf_scaffold_29024
Order: Sphingomonadales (50%)
4 1239 bp 63.12 2.42 98.79
SCNpilot_expt_500_bf_scaffold_28937 2 1242 bp 40.98 2.42 90.34
SCNpilot_expt_500_bf_scaffold_29028
Species: Niabella soli (50%)
2 1238 bp 44.83 2.42 85.54
SCNpilot_expt_500_bf_scaffold_29033
Species: Beijerinckia indica (50%)
2 1238 bp 61.31 2.42 81.42
SCNpilot_expt_500_bf_scaffold_24739 2 1446 bp 40.87 2.42 20.75
SCNpilot_expt_500_bf_scaffold_28977
Species: Sporocytophaga myxococcoides (100%)
2 1241 bp 40.93 2.42 99.11
SCNpilot_expt_500_bf_scaffold_28980
Species: Afipia clevelandensis (50%)
2 1241 bp 65.11 2.42 100.08
SCNpilot_expt_500_bf_scaffold_24756 2 1446 bp 37.14 2.42 51.04
SCNpilot_expt_500_bf_scaffold_24775
Species: Acidovorax citrulli (100%)
1 1445 bp 59.58 2.42 99.86
SCNpilot_expt_500_bf_scaffold_33161
Species: Sporocytophaga myxococcoides (50%)
2 1035 bp 44.73 2.42 101.16
SCNpilot_expt_500_bf_scaffold_33271
Species: Nematostella vectensis (50%)
2 1030 bp 39.90 2.43 81.26
SCNpilot_expt_500_bf_scaffold_31259
Species: Candidatus Sulcia muelleri (100%)
1 1134 bp 40.92 2.43 87.57
SCNpilot_expt_500_bf_scaffold_33289
Species: Afipia felis (100%)
1 1029 bp 62.10 2.43 99.71
SCNpilot_expt_500_bf_scaffold_33290
Species: Elizabethkingia meningoseptica (100%)
1 1029 bp 42.95 2.43 99.71
SCNpilot_expt_500_bf_scaffold_31276
Species: RBG_16_Betaproteobacteria_64_18_curated (50%)
2 1134 bp 70.81 2.43 97.88
SCNpilot_expt_500_bf_scaffold_33304 1 1028 bp 57.20 2.43 48.44
SCNpilot_expt_500_bf_scaffold_17093 3 2060 bp 46.65 2.43 41.94
SCNpilot_expt_500_bf_scaffold_29055 3 1237 bp 33.14 2.43 49.96
SCNpilot_expt_500_bf_scaffold_29064 1 1237 bp 58.77 2.43 68.88
Displaying items 401-450 of 13467 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.