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SCNpilot_expt_500_bf_scaffold_206_46

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 46055..47971

Top 3 Functional Annotations

Value Algorithm Source
carbamoyl-phosphate synthase L chain, ATP-binding; K03086 RNA polymerase primary sigma factor id=12496512 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 639.0
  • Bit_score: 1232
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 638.0
  • Bit_score: 1155
  • Evalue 0.0
carbamoyl-phosphate synthase L chain, ATP-binding; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 92.8
  • Coverage: 638.0
  • Bit_score: 1155
  • Evalue 0.0
  • rbh

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1917
GTGGCTGTACGTGGAAGAAAACCGGGCGGTAGCGCCAAGAAACCCGAAGCGCTGATCACGGCCAAGGAACTGACGCCCCTGGAGGCCGAGGCCCGCCGTACCCAGCTGAAGAACCTGATCATCCTGGGCAAGGAACGGGGGTTCCTGACCTACGCGGAAATCAACGACCACCTGCCCGACGAAGTGCTGGATGCCGATCAGATCGAAGGCGTCATCAGCATGATCAACGACATGGGCATCCAGGTCTACGACGAAGCGCCCGACGCCGAAACGCTGCTGATGCAGGAAGCCACGCCCGCCGTCGCGGACGAAGATGTCGTCGCCGAAGCGGAGCAGGCTCTGACGACCGTGGACTCGGAATTCGGACGCACCACCGATCCCGTGCGCATGTACATGCGTGAAATGGGTTCGGTCGATCTGCTGACGCGCGAAGGCGAGATCGAAATTGCCAAGCGCATCGAAGAAGGTCTGCGCCACATGGTCCAGGCGATTTCCTCCTGCCCGCTCACGATCCAGCAGATCCTCGACATGGCCGCCCAGGTCGAGAGGGACGAGCTGCGCATCGACGAGCTGATCGACGGTTTCGTCGAGGTCGAGGCGGATGCGCCTGCCGACGACGACACCGAAGTGGAGGACAGCGCCGAAGAGGAAGAGGAAGACGAGGATGCCAGCGCAGCCGTCGCGGCCGCCAACCTGGCCCAGCTCAAGGCCGATGCGCTTGCGCAGTTCGACTTCATCCGCAAGGCCTACAAGAAAGCGCAGAATGCATTGACGAAATACGGCCTGGGCAGCCCCCAGCATCTGAAAGCCCAGACCGAAGTAACTGAGCTCCTGATGGCCATCCGCTTTTCAGTCCGGCAGGTCGACAGCCTGTGCGACCAGATTCGCAACGCCGTGGAGGAAGTCCGTTCGCACGAACGCCGGATCATGGATTTCTGCGTCAACCGTTCCGGCATGCCCCGTGCGCATTTCATCAAGACCTTCCCCGGCAACGAAACCAATCTGGCCTGGCTGGACAAGGAAATCGCGGCCAAAAAAGGTTACTGCTCCACGCTCGCCCGCCTGCAATACGAAATCAAGGCACACCAGGAAGCCCTGATGGCCATGCAGGACCGCGTCGGCCTGCCGATCAAGAACCTCAAGGACATCAACAAGCAGATGTCCACCGGCGAGGCCAAGGCACGCCGCGCCAAACGCGAGATGATCGAGGCCAACCTGCGCCTCGTGATCTCCATTGCCAAGAAATACACCAACCGCGGCCTGCAGTTCCTCGATTTGATTCAGGAAGGCAACATCGGGCTGATGAAGGCGGTCGACAAGTTCGAATACCGCCGCGGCTACAAATTCTCGACGTATGCCACCTGGTGGATTCGCCAGGCGATCACGCGTTCGATCGCCGACCAGGCCCGCACCATCCGCATCCCGGTTCACATGATCGAAACGATCAACAAGATGAACCGCATCAGCCGCCAGATCCTGCAGGAAACCGGTATCGAGCCGGATCCCGCCACACTGGCAATCAAGATGGAAATGCCGGAAGACAAGATCCGCAAGATCATGAAGATCGCCAAGGAACCGATCTCCATGGAAACGCCGATCGGGGACGACGAAGACTCTCATCTCGGCGATTTCATCGAGGATGCCAGCACCCTGTCGCCCGACGACTCCGCAATCTACGGCAACCTGCGCGACGCGACCCGCGAGGTGCTGGACAGCCTGACGTCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGTATCGAGATGAACACCGACCATACGCTGGAAGAAGTCGGCAAGCAGTTCGACGTTACCCGCGAACGTATCCGCCAAATAGAAGCCAAGGCCCTGCGCAAGCTGCGCCACCCCAGCCGCTCGGAAAAGCTGAGGAGCTTCGTGGGCAGTGGCGAGCAGTAA
PROTEIN sequence
Length: 639
VAVRGRKPGGSAKKPEALITAKELTPLEAEARRTQLKNLIILGKERGFLTYAEINDHLPDEVLDADQIEGVISMINDMGIQVYDEAPDAETLLMQEATPAVADEDVVAEAEQALTTVDSEFGRTTDPVRMYMREMGSVDLLTREGEIEIAKRIEEGLRHMVQAISSCPLTIQQILDMAAQVERDELRIDELIDGFVEVEADAPADDDTEVEDSAEEEEEDEDASAAVAAANLAQLKADALAQFDFIRKAYKKAQNALTKYGLGSPQHLKAQTEVTELLMAIRFSVRQVDSLCDQIRNAVEEVRSHERRIMDFCVNRSGMPRAHFIKTFPGNETNLAWLDKEIAAKKGYCSTLARLQYEIKAHQEALMAMQDRVGLPIKNLKDINKQMSTGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGIEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDEDSHLGDFIEDASTLSPDDSAIYGNLRDATREVLDSLTSREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFVGSGEQ*