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SCNpilot_expt_500_bf_scaffold_1560_3

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN1_62_76

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(1358..4774)

Top 3 Functional Annotations

Value Algorithm Source
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] id=12493505 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 999.99
  • Bit_score: 2257
  • Evalue 0.0
  • rbh
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 999.99
  • Bit_score: 1985
  • Evalue 0.0
  • rbh
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.1
  • Coverage: 999.99
  • Bit_score: 1985
  • Evalue 0.0

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3417
ATGCCGTTCTTTCCCCCTTCCTCCCCGCCTTCCGGCCACCGCCAGTCCGGCCTTGCCGGCGCGGCCGACGCGCTGTACCTGGCCGAACTGGCGCATACCACCGCACCGCTGGCGGTGGTATGCGCCAACGCGTGGGACGCCAACCGGCTGGCCGAGGAACTGCGCTGGTTCGATCCGGCATTGCGGGTATGCGCGTTCCCCGACTGGGAAACCCTGCCCTACGACACGTTTTCACCGCACCCGGATCTGATTTCCGAGCGGCTGGCAAGCCTGTATCAGATTTCGCGCGGCGAGTTCGATGTGGCCGTGGTCACGCTCTCGACCGCACTGTACCGGCTGGCGCCGCCGGCTTTTCTTGCCGCCCACACGTTCTTCCTGAAGCAGAAGGACACGCTGGACGAAGCGGCCTTCCGTGCCCAGATGACTCTGGGCGGCTACACCCATGTGAACCAGGTCTTCGCACCGGGCGAATTCTCGATCCGCGGCGGCTTGATCGATCTCTTTCCCATGGGCAGCGCCCTGCCTTATCGCATCGACCTGTTCGACAATGAGATTGAGACCCTGCGGGCATTCGACGTCGATACCCAGCGCAGCATCTATCCTGTCGACGAAGTGCGGCTGCTGCCTGCACGCGAGTTTCCGTTCGACGAGGCCGGGATCACCCGCTTCCGCCAGAATTTTCGCGAGCGTTTCGAGGGCGATCCGTCCAGGTCCAAGCTCTACAAGGATGTCAGCAACCGCCTGGCGCCGGCCGGAATCGAGTACTACCTGCCGCTGTTTTTTGATGAAACGGCCACGCTGTTCGACTATCTGCCCAAGAATACCCGTTTCGTCAGCCACGGCGCTCTCGACCCGGCCGGGCAGGCCTTCTGGGCCGATGCGCAGGGCCGCTATCGCCTGCTGTCGGGCGATAAGGATCGCCCGTTGCTGCCGCCCGTCGACCTGTTCCTGCCGACCGACGCGTTCTTCAGTCTGGCCAAGGGCTACGCGCGGCTCGATCTGGAACAGACCGGCGAGGGACTGGCCCGCCCGGTGCCCCCCATTGCGGTCGATCGCCGCGAAGCCCGGCCGGTTGCCAGGCTGCAAGGATTCATTGACGCATTCCAGGGCACCGTCCTGATCGTCGCGCCCTCGGCCGGACGCCGCGAAACCCTGTACGAATACTTCGCCGAGCATGGGCTGGATACCGGGCTGTGCGAAGGCTGGGCCGACTGCCGGCCGGAATCCGGACGCATTCTGTTGACCCATGGCCCGCTGGCGGAGGGTTTCGTCACCACGGACGGCACGCTCGCCGTCATCACCGAGACCGAACTCTACGCGCTTCCGCCCAGAACCCGGCGCGCCCGCGAAGCCCGGGCGACGCAGATCGACAATCTGCTGCGTGATCTGTCCGAACTGAAGCCGGGCGATCCGGTGGTGCACACGCAGTACGGCGTCGGCCAGTACCTCGGGCTCGTCAACATGGACCTCGGCGACGGCGACACCGAATTCCTGCAGCTGGAATATGCGAAGGGCGACAAGCTCTACGTGCCGGTCGCCAACCTGCATCTGATCTCGCGCTATTCCGGCGCCGGCGAAGGGGCGGCGCCACTGCATCGACTTGGCACCGACCAGTGGGACAAGGCGCGCCGCCGGGCGATGCAGGCCGCCCGCGACACCGCCGCCGAACTGCTCAATCTGTATGCCTTGCGCGCGGCGCGCGAAGGCCACGCATTCAAATTCTCGCCGCATGACTACGAAGCCTTCACCGAAGGTTTCGGCTACGAGGAAACCCCCGACCAGGCCGCGGCGATCGCGGCGGTCATGGCCGACATGCAGACGGGAAAACCGATGGACCGGCTGGTGTGCGGCGACGTCGGATTCGGCAAGACCGAGGTCGCGCTGCGCGCCGCCTTCATGGCGGTGATGGGCGGTTACCAGGTGGCCGTACTGGTCCCGACCACGCTCTTGGCCGAGCAGCACTTCAATAATTTCTCCGACCGCTTCTCCGCCTGGCCGGTGAAGCTGGCCGAGCTGTCGCGTTTCCGCAGCCCCAGAGAGCAGGCCGAGGCGCTGCAGGCGCTCGCCGACGGCAAGCTCGACATCGTCATCGGCACCCACCGGCTGATCCAGAAGGACGTGAAATTCGCGCGTCTGGGCCTGGTGATCCTGGACGAGGAACACCGCTTCGGGGTGCGCCAGAAGGAGCAGTTGAAGGCCCTGCGCGCCGAGGTGGATGTGCTGACCCTGACCGCCACGCCGATCCCGCGCACGCTGGCGATGTCGCTCGAAGGTATCCGCGATTTTTCGGTCATTGCCACCGCGCCGCAGAAGCGGCTGGCGATCAAGACCTTCGTGCACCCGTTTTCAAATGGCCTGATCCGCGAGGCGGTGTTGCGCGAACTGAAACGCGGCGGCCAGGTGTACTTTCTCCACAACGAGGTCAGCACCATCGAAACCATGCGCGAGCGCCTGGAAAAGCTGCTGCCCGAAGCACGCATCCGCGTCGGCCACGGCCAGATGGGCGAGCGTGAACTGGAACAGGTGATCCGCGATTTCTACCAGCAGCGCTACGACATCCTGCTGTGCACCACCATCATCGAGACCGGCATCGACATCCCGACCGCCAACACCATTCTCATCAACCGCGCCGACCGATTCGGCCTGGCGCAGCTGCATCAGCTAAGAGGCCGGGTCGGACGCTCGCATCACCAGGCCTTCGCCTACCTGCTGGTGGACGAGGACCGCTCCCTGACGCCGCAGGCAAAAAAACGCCTGGAAGCCATTCAACTGATGGAAGAACTCGGCTCCGGTTTTCATCTCGCCATGCAGGACCTGGAAATCCGCGGCGCCGGCGAAGTGCTGGGCGACAAGCAGAGCGGCGAGATTCTTGAAGTCGGCTTCCCGCTCTACAACGACATGCTGGCCGGCGCGGTGGCGAGCCTCAAGGCCGGCAAGGAGCCCGACATGAACCAGCCGCTCGGCGTCGTGTCGGAAATCAATCTGCACCTGCCCGCGCTGCTGCCGACGGATTACTGCCCCGACATCCACGAACGGCTGGTGCTGTACAAGCGGCTGGCGAGTTGCCAGACGCCTGACGATCTGACGGCGATGCAGGAAGAACTGATCGATCGTTTTGGCGCACTGCCCGATACGGCCCGTGCCCTGCTGGCCGTGCACCGTCTGCGCATGTCGACCCGCCCCTACGGCATTGCCCGGCTGGACGTGTCCGGCGAGGGCATGAACGTGCAATTCGTCCCCAACCCGCCCATCGATCCGGGTAGAATCCTCCAGTTGATCCAGGGCAAGGCCGGCTACCGGCTCGCCGGCCCCGACCGGCTGAAACTGGCCACGCCCCTGCCCGATGTCAACCGGCGGGTCGGTGCAGTCACCGCATTCCTCGCCGCGCTCGGCGATCCCATTCCAACCGAACCCTAA
PROTEIN sequence
Length: 1139
MPFFPPSSPPSGHRQSGLAGAADALYLAELAHTTAPLAVVCANAWDANRLAEELRWFDPALRVCAFPDWETLPYDTFSPHPDLISERLASLYQISRGEFDVAVVTLSTALYRLAPPAFLAAHTFFLKQKDTLDEAAFRAQMTLGGYTHVNQVFAPGEFSIRGGLIDLFPMGSALPYRIDLFDNEIETLRAFDVDTQRSIYPVDEVRLLPAREFPFDEAGITRFRQNFRERFEGDPSRSKLYKDVSNRLAPAGIEYYLPLFFDETATLFDYLPKNTRFVSHGALDPAGQAFWADAQGRYRLLSGDKDRPLLPPVDLFLPTDAFFSLAKGYARLDLEQTGEGLARPVPPIAVDRREARPVARLQGFIDAFQGTVLIVAPSAGRRETLYEYFAEHGLDTGLCEGWADCRPESGRILLTHGPLAEGFVTTDGTLAVITETELYALPPRTRRAREARATQIDNLLRDLSELKPGDPVVHTQYGVGQYLGLVNMDLGDGDTEFLQLEYAKGDKLYVPVANLHLISRYSGAGEGAAPLHRLGTDQWDKARRRAMQAARDTAAELLNLYALRAAREGHAFKFSPHDYEAFTEGFGYEETPDQAAAIAAVMADMQTGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHFNNFSDRFSAWPVKLAELSRFRSPREQAEALQALADGKLDIVIGTHRLIQKDVKFARLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAIKTFVHPFSNGLIREAVLRELKRGGQVYFLHNEVSTIETMRERLEKLLPEARIRVGHGQMGERELEQVIRDFYQQRYDILLCTTIIETGIDIPTANTILINRADRFGLAQLHQLRGRVGRSHHQAFAYLLVDEDRSLTPQAKKRLEAIQLMEELGSGFHLAMQDLEIRGAGEVLGDKQSGEILEVGFPLYNDMLAGAVASLKAGKEPDMNQPLGVVSEINLHLPALLPTDYCPDIHERLVLYKRLASCQTPDDLTAMQEELIDRFGALPDTARALLAVHRLRMSTRPYGIARLDVSGEGMNVQFVPNPPIDPGRILQLIQGKAGYRLAGPDRLKLATPLPDVNRRVGAVTAFLAALGDPIPTEP*