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SCNpilot_expt_500_bf_scaffold_8074

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8074_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(220..960)
DNA (741bp) protein (247aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Adenosylhomocysteinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVR7_9GAMM
adenosylhomocysteinase
SCNpilot_expt_500_bf_scaffold_8074_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(912..1430)
DNA (519bp) protein (173aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Adenosylhomocysteinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSY8_9GAMM
adenosylhomocysteinase
SCNpilot_expt_500_bf_scaffold_8074_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1427..1558)
DNA (132bp) protein (44aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Adenosylhomocysteinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSY8_9GAMM
adenosylhomocysteinase
SCNpilot_expt_500_bf_scaffold_8074_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1854..3416
DNA (1563bp) protein (521aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTT1_9GAMM
SCNpilot_expt_500_bf_scaffold_8074_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3771..4493
DNA (723bp) protein (241aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVC9_9GAMM
SCNpilot_expt_500_bf_scaffold_8074_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4399..4671)
DNA (273bp) protein (91aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVD9_9GAMM
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:EIL91180.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative endonuclease containing a URI domain
SCNpilot_expt_500_bf_scaffold_8074_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4676..5305)
DNA (630bp) protein (210aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS29_9GAMM rbh
Glutathione S-transferase {ECO:0000313|EMBL:EIL90020.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutathione S-transferase rbh
SCNpilot_expt_500_bf_scaffold_8074_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5438..7300)
DNA (1863bp) protein (621aa)
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Rhodanobacter denitrificans RepID=M4NJT8_9GAMM rbh
ATPase component of ABC transporters with duplicated ATPase domain {ECO:0000313|EMBL:AGG90357.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATPase component of ABC transporters with duplicated ATPase domain rbh
SCNpilot_expt_500_bf_scaffold_8074_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7356..7940)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07KS1_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07463.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_500_bf_scaffold_8074_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8185..8442)
DNA (258bp) protein (86aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSZ6_9GAMM
Displaying 10 items

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