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SCNpilot_expt_500_bf_scaffold_16646_4

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(5075..5764)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.7
  • Coverage: 209.0
  • Bit_score: 408
  • Evalue 6.50e-111
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 94.3
  • Coverage: 209.0
  • Bit_score: 395
  • Evalue 1.30e-107
DNA-directed RNA polymerase subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL14_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 96.7
  • Coverage: 209.0
  • Bit_score: 408
  • Evalue 4.60e-111

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 690
ATGGTCAAGGTGTTCCTGGCCGTGAAGCGCCGCATCCAGCCGGGCGACAAGATGGCCGGCCGCCACGGCAACAAGGGCGTGGTTTCCAACGTGGTGCCAGTCGAGGACATGCCGTACATGGCCAACGGCGAGGCGGTGGATATCTGCCTCAACCCGCTGGGCGTGCCTTCGCGCATGAACATCGGCCAGATTCTGGAAGTGCATCTGGGCTGGGCCGCCAAGGGCCTGGGCAAGAAGATCCAGAAGATGCTCGAGGCGCAGGAGAAGGTGGTCGAGATCCGCAAGTTCCTCGACCAGATCTACAACACCCACGTCGCCGGCGCGGTGCAGCACGTCGACCTGAAGTCGCTCACCGACAAGGAGATCCTGGCGCTCGCCACCAACCTGCAGGAAGGCGTGCCGATGGCGACGCCGGTGTTCGACGGCGCCGAGGAGACCGAGATCAAGGCGATGCTGAAGCTGGCGGATCTGCCCGAGTCGGGCCAGACCACGCTGTACGACGGTCGCACCGGCGAGGCGTTCGATCGCCCGGTCACCGTGGGCTACATGCATTACCTGAAGCTCAACCACCTGGTTGACGACAAGATGCACGCACGCTCCACCGGCCCGTACTCGCTGGTCACCTCGGCGAAATGGAAGTCTGGGCGCTGGAAGCCTACGGCGCGGCCTACACCCTGCAGGAAATGCTGA
PROTEIN sequence
Length: 230
MVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMANGEAVDICLNPLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMLEAQEKVVEIRKFLDQIYNTHVAGAVQHVDLKSLTDKEILALATNLQEGVPMATPVFDGAEETEIKAMLKLADLPESGQTTLYDGRTGEAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTSAKWKSGRWKPTARPTPCRKC*