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SCNpilot_expt_500_bf_scaffold_16268_4

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 42 / 55 MC: 1 BSCG 44 / 51 MC: 6 ASCG 14 / 38 MC: 4
Location: 2695..3273

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUW1_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 192.0
  • Bit_score: 349
  • Evalue 1.60e-93
  • rbh
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 89.1
  • Coverage: 192.0
  • Bit_score: 349
  • Evalue 5.20e-94
  • rbh
RNA polymerase sigma factor {ECO:0000313|EMBL:AGB74496.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 192.0
  • Bit_score: 349
  • Evalue 2.30e-93

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Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
TTGTCGATGAAGTGGGATCGCGCGCCCAAGAGTGGCGACCCGGATGAGGATTTGCTCGGTCGCATCGCCGCGGGCGACGTTCCGGCGATGCGCGTGATGATAACACGGCATTCGCCGCGCATCATCGCAGTAGCGACCCGAATGCTTGGCGATGCGACCGAGGCCGAGGATGTGGCGCAGGAGACGTTCCTGCGCGTTTGGCGCAATGCCGGCGGCTGGCGCCAGCGCAACGCCCGCTTCAGCACGTGGGTGCATCGCGTGGCGATCAACCTTTGCTACGATCGCCTGCGCCGGCGCAAGGACGTGCTTGCCGAGCAGCCGCCCGATGTCGAGTATGAGGGGCCGGCGCCGGATGCGGGTTTGTTGAGCGAGGACGACCCGTCCAGGCGCGTGGAGCGAGCCATACAGATGATTGCGCCCCGGCAGCGCGAGGCAATCATCCTGGTTTACTATCAGGCGCTGTCGAATGCCGAGGCGGCTGAGATCATGGACGTCAGCGTCGACGCACTGGAAAGCCTGCTAGCGCGCGGAAGGCGTTCGTTGCAGGTACTTTTGTTGAAGGAACAGGGCGATGGTTGA
PROTEIN sequence
Length: 193
LSMKWDRAPKSGDPDEDLLGRIAAGDVPAMRVMITRHSPRIIAVATRMLGDATEAEDVAQETFLRVWRNAGGWRQRNARFSTWVHRVAINLCYDRLRRRKDVLAEQPPDVEYEGPAPDAGLLSEDDPSRRVERAIQMIAPRQREAIILVYYQALSNAEAAEIMDVSVDALESLLARGRRSLQVLLLKEQGDG*