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SCNpilot_expt_500_bf_scaffold_23853_1

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 42 / 55 MC: 1 BSCG 44 / 51 MC: 6 ASCG 14 / 38 MC: 4
Location: 2..295

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine-binding periplasmic protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQV8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 75.8
  • Coverage: 99.0
  • Bit_score: 153
  • Evalue 1.10e-34
ABC opine/polyamine transporter, periplasmic binding protein {ECO:0000313|EMBL:EYR81123.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.8
  • Coverage: 99.0
  • Bit_score: 153
  • Evalue 1.60e-34
opine/polyamine ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 70.7
  • Coverage: 99.0
  • Bit_score: 143
  • Evalue 3.70e-32

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 294
GAAGGTAGCGGCTTTCAAATCAACACGATCAACCTGGTGAAGAATGCGCCGGCTGGAGACGCGGCGAAGAAGTTCATCGACTACACGCTGAGCCCGGAGGCACAGGCAGCCTTTACCAGCGAAATGTTTTACGCGCCGACGAACTCGAAGACTGTTGTCGCCAAGGAGGCGTTGGAGCGCACGGCGGCTGGCGATATGGACAAGATGATCGATATCGACTGGCTCGCCGTGGCGAAGGTCCGGGATCGTATTACCGAGCAATGGCGCCGCCGCATCATTCCGCTCAGCCGCTAA
PROTEIN sequence
Length: 98
EGSGFQINTINLVKNAPAGDAAKKFIDYTLSPEAQAAFTSEMFYAPTNSKTVVAKEALERTAAGDMDKMIDIDWLAVAKVRDRITEQWRRRIIPLSR*