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SCNPILOT_CONT_500_P_Rhizobiales_62_14

SCNPILOT_EXPT_500_BF_STEP10_Rhizobiales_62_5
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 4.87 Longest contig: 28.72 Kbp Bin length: 3.50 Mbp GC content: 61.53 %
Contigs count: 789 Features count: 4059 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 1 BSCG 38 / 51 MC: 3 ASCG 8 / 38
Displaying items 601-650 of 789 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_22641
Species: Afipia felis (100%)
2 1571 bp 57.22 4.46 99.49
SCNpilot_expt_500_bf_scaffold_27788
Species: Afipia broomeae (50%)
2 1296 bp 61.50 3.86 100.00
SCNpilot_expt_500_bf_scaffold_16855
Species: Nitrobacter hamburgensis (50%)
2 2091 bp 63.22 4.30 81.06
SCNpilot_expt_500_bf_scaffold_29748
Species: Rhodopseudomonas palustris (100%)
2 1205 bp 58.84 3.73 88.88
SCNpilot_expt_500_bf_scaffold_33757
Species: Bradyrhizobium elkanii (50%)
2 1646 bp 55.77 4.86 52.86
SCNpilot_expt_500_bf_scaffold_36710
Species: Rhodopseudomonas palustris (100%)
2 1569 bp 60.29 3.19 59.08
SCNpilot_expt_500_bf_scaffold_18823
Species: Bradyrhizobiaceae bacterium SG-6C (50%)
2 1872 bp 59.29 4.14 98.08
SCNpilot_expt_500_bf_scaffold_19728
Species: Starkeya novella (50%)
2 1788 bp 61.02 4.05 96.48
SCNpilot_expt_500_bf_scaffold_16096
Species: Bradyrhizobium oligotrophicum (50%)
2 2190 bp 56.44 5.02 88.77
SCNpilot_expt_500_bf_scaffold_30737
Species: Rhodopseudomonas palustris (50%)
2 1159 bp 61.17 4.10 82.83
SCNpilot_expt_500_bf_scaffold_17793
Species: Bradyrhizobium sp. LTSP885 (50%)
2 3257 bp 63.25 5.68 99.66
SCNpilot_expt_500_bf_scaffold_16353
Species: Bradyrhizobium elkanii (50%)
2 2158 bp 62.05 6.02 99.95
SCNpilot_expt_500_bf_scaffold_19473
Species: Anaeromyxobacter sp. K (50%)
2 1812 bp 58.77 3.45 96.52
SCNpilot_expt_500_bf_scaffold_17027
Species: Oligotropha carboxidovorans (100%)
2 2069 bp 62.64 3.50 99.90
SCNpilot_expt_500_bf_scaffold_30996
Species: Rhodopseudomonas palustris (50%)
2 1147 bp 61.99 3.05 77.68
SCNpilot_expt_500_bf_scaffold_31748
Species: Bradyrhizobium sp. S23321 (50%)
2 1907 bp 56.84 4.46 66.86
SCNpilot_expt_500_bf_scaffold_29246
Species: Bradyrhizobium sp. STM 3809 (50%)
2 1229 bp 63.22 3.25 95.44
SCNpilot_expt_500_bf_scaffold_25590
Species: Achromobacter sp. RTa (50%)
2 1398 bp 62.88 3.58 100.00
SCNpilot_expt_500_bf_scaffold_30233
Species: Bradyrhizobium diazoefficiens (50%)
2 1184 bp 57.01 3.59 96.28
SCNpilot_expt_500_bf_scaffold_18322
Species: Bradyrhizobium japonicum (50%)
2 2484 bp 56.52 5.33 89.13
SCNpilot_expt_500_bf_scaffold_27302
Species: Bradyrhizobium sp. STM 3843 (50%)
2 2201 bp 55.88 3.52 30.80
SCNpilot_expt_500_bf_scaffold_17551
Species: Nitrobacter hamburgensis (50%)
2 2007 bp 59.69 4.36 92.38
SCNpilot_expt_500_bf_scaffold_18331
Species: Rhodopseudomonas palustris (50%)
2 1923 bp 61.57 8.06 91.26
SCNpilot_expt_500_bf_scaffold_8155
Species: Bradyrhizobium sp. CCGE-LA001 (50%)
2 4004 bp 57.87 4.50 83.99
SCNpilot_expt_500_bf_scaffold_8923
Species: Nitrobacter hamburgensis (50%)
2 3733 bp 60.94 6.43 89.85
SCNpilot_expt_500_bf_scaffold_29516
Species: Bradyrhizobium sp. WSM471 (50%)
2 1216 bp 61.43 3.50 92.76
SCNpilot_expt_500_bf_scaffold_27055
Species: Nitrobacter hamburgensis (50%)
2 1329 bp 64.86 4.33 89.39
SCNpilot_expt_500_bf_scaffold_12730
Species: Afipia sp. 1NLS2 (100%)
2 3361 bp 56.86 4.02 81.40
SCNpilot_expt_500_bf_scaffold_16635
Species: Bradyrhizobium sp. STM 3843 (50%)
2 2120 bp 59.58 4.60 99.48
SCNpilot_expt_500_bf_scaffold_36850
Species: marine sediment metagenome (50%)
2 1633 bp 54.13 4.29 57.87
SCNpilot_expt_500_bf_scaffold_24183
Species: Rhodopseudomonas palustris (50%)
2 1478 bp 65.76 3.55 87.89
SCNpilot_expt_500_bf_scaffold_21467
Species: Rhodovulum sp. PH10 (50%)
2 1653 bp 56.32 4.08 41.02
SCNpilot_expt_500_bf_scaffold_31528
Species: Bradyrhizobium japonicum (100%)
2 1119 bp 59.07 4.02 96.51
SCNpilot_expt_500_bf_scaffold_29283
Species: Nitrobacter hamburgensis (50%)
2 1227 bp 63.90 5.30 96.09
SCNpilot_expt_500_bf_scaffold_22700
Species: Rhodopseudomonas palustris (50%)
2 1566 bp 60.22 3.03 78.93
SCNpilot_expt_500_bf_scaffold_33039
Species: Rhodopseudomonas palustris (50%)
2 1041 bp 62.06 5.04 68.88
SCNpilot_expt_500_bf_scaffold_13573
Species: Bradyrhizobium japonicum (50%)
2 2583 bp 64.07 5.90 95.01
SCNpilot_expt_500_bf_scaffold_17845
Species: Rhodopseudomonas palustris (50%)
2 1974 bp 59.73 5.07 71.88
SCNpilot_expt_500_bf_scaffold_19790
Species: Hoeflea sp. BAL378 (50%)
2 2536 bp 57.45 3.55 73.58
SCNpilot_expt_500_bf_scaffold_44763
Species: Rhodopseudomonas palustris (50%)
2 1319 bp 53.22 2.46 39.80
SCNpilot_expt_500_bf_scaffold_32427
Species: Rhodopseudomonas palustris (50%)
2 1070 bp 57.66 3.74 80.19
SCNpilot_expt_500_bf_scaffold_20661
Species: Afipia broomeae (50%)
2 1711 bp 63.47 5.84 74.52
SCNpilot_expt_500_bf_scaffold_24740
Species: Rhodopseudomonas palustris (100%)
2 1446 bp 64.52 4.84 100.21
SCNpilot_expt_500_bf_scaffold_14636
Species: Bradyrhizobium elkanii (50%)
2 2406 bp 62.14 3.74 97.88
SCNpilot_expt_500_bf_scaffold_41649
Species: Nitrobacter hamburgensis (50%)
2 1360 bp 59.78 3.49 99.04
SCNpilot_expt_500_bf_scaffold_27879
Species: Rhodopseudomonas palustris (100%)
2 1292 bp 64.94 3.87 100.77
SCNpilot_expt_500_bf_scaffold_21258
Species: Nitrobacter hamburgensis (100%)
2 1666 bp 62.73 4.50 100.12
SCNpilot_expt_500_bf_scaffold_18651
Species: Nitrobacter hamburgensis (50%)
2 1890 bp 58.62 3.31 77.62
SCNpilot_expt_500_bf_scaffold_15596
Species: Rhodopseudomonas palustris (100%)
2 2258 bp 63.20 4.98 90.48
SCNpilot_expt_500_bf_scaffold_18141
Species: Bradyrhizobium sp. WSM1253 (100%)
2 1941 bp 56.93 3.61 99.85
Displaying items 601-650 of 789 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.