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SCNpilot_expt_500_bf_scaffold_10085_1

Organism: SCNPILOT_EXPT_300_BF_Alicycliphilus_69_12

partial RP 20 / 55 MC: 2 BSCG 25 / 51 MC: 2 ASCG 9 / 38
Location: 2..331

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRJ1_ALIDB similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 109.0
  • Bit_score: 217
  • Evalue 9.50e-54
RNA polymerase sigma-710 subunit RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 109.0
  • Bit_score: 217
  • Evalue 3.00e-54
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 109.0
  • Bit_score: 217
  • Evalue 1.30e-53

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Taxonomy

Alicycliphilus sp. B1 → Alicycliphilus → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 330
TCGATGGAAACCCCCATCGGCGACGACGACGACAGCCACCTGGGCGACTTCATCGAGGACAGCAACAACACCGCGCCCATCGACGCCGCCATGCAGGCCGGCCTGCGCGACGTGGTCAAGGACATCCTCGACGGCCTGACCCCGCGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGAGCACCGACCACACGCTGGAGGAAGTGGGCAAGCAGTTCGACGTGACGCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTCAAGCATCCCAGCCGCTCGGACAAGCTGCGCAGCTTCATCGACTCGCTGTAA
PROTEIN sequence
Length: 110
SMETPIGDDDDSHLGDFIEDSNNTAPIDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL*