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SCNpilot_expt_500_bf_scaffold_10293_6

Organism: SCNPILOT_EXPT_300_BF_Alicycliphilus_69_12

partial RP 20 / 55 MC: 2 BSCG 25 / 51 MC: 2 ASCG 9 / 38
Location: comp(4355..4948)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D3522 similarity UNIREF
DB: UNIREF100
  • Identity: 45.9
  • Coverage: 194.0
  • Bit_score: 160
  • Evalue 1.90e-36
Transcriptional regulator {ECO:0000313|EMBL:EJN09564.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.7
  • Coverage: 197.0
  • Bit_score: 157
  • Evalue 1.70e-35
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 41.1
  • Coverage: 192.0
  • Bit_score: 145
  • Evalue 2.00e-32

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Taxonomy

Herbaspirillum sp. YR522 → Herbaspirillum → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 594
GTGCATGGCGTGCTGTCGGGGCCCCTGTACATCGGGGTCACGGAGCACTTGGTGGCCTCGGGCGGCTCGGGCATCCCGGCCGCGCTGGAGATCCTGCGGTCGCGCGCGCCGGGGGTCCGCCCCGAGCTGATGGTGCTGAGCTACTGGCAGCTCAAGCGGGCCCTGCGCGAAGGCCGGGTCGAGATTGCGATCCATGGGCGTTATGGAAACGACCGGTCGCTGGAATACCTGGCGCTGTTCGACGAGGAGCACAGGCTCTATGCGCGGCCCGATTTTTCCCCCGGGCCAGGGGCGCCGGTGCGCCTGGTGATGCGCACCCACCCGTTCGTCGACGCCCTGCTCGAATCGCCCCCTTATGTGCCGGGGCCGGTCGCCAACGGCCTCGAATCGGTGGCGTTCCACGTCGCCGCCGGGGGCTGCGTCGGCCTGCTGCCGGAGCACTACGCGAGCCTGGTCAGCGCCCGCTTTCCCCTGGCGGTCTGGGACGAGGCCGTGCGCTTCAAGACGACGATCTGCGCGGTGACCATGCGTTCGCGGGCCTGCTCGAAGGCCGTCACGCTGCTGCGCGACATCCTCAAGTCGCAGTGCGAATGA
PROTEIN sequence
Length: 198
VHGVLSGPLYIGVTEHLVASGGSGIPAALEILRSRAPGVRPELMVLSYWQLKRALREGRVEIAIHGRYGNDRSLEYLALFDEEHRLYARPDFSPGPGAPVRLVMRTHPFVDALLESPPYVPGPVANGLESVAFHVAAGGCVGLLPEHYASLVSARFPLAVWDEAVRFKTTICAVTMRSRACSKAVTLLRDILKSQCE*