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SCNpilot_expt_500_bf_scaffold_4066_1

Organism: SCNPILOT_EXPT_750_BF_Myxococcales_68_20

partial RP 37 / 55 MC: 6 BSCG 35 / 51 MC: 4 ASCG 7 / 38
Location: comp(1..780)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA n=1 Tax=Thauera phenylacetica B4P RepID=N6ZSJ6_9RHOO similarity UNIREF
DB: UNIREF100
  • Identity: 41.4
  • Coverage: 256.0
  • Bit_score: 168
  • Evalue 7.00e-39
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.7
  • Coverage: 234.0
  • Bit_score: 170
  • Evalue 4.40e-39
fliA; flagellar operon sigma factor FliA; K02405 RNA polymerase sigma factor for flagellar operon FliA similarity KEGG
DB: KEGG
  • Identity: 41.3
  • Coverage: 252.0
  • Bit_score: 169
  • Evalue 1.70e-39

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Taxonomy

Pseudoxanthomonas suwonensis → Pseudoxanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 780
ATGACCAAGGATCTGACGACTCCCCATCTCCCACGTGAGATCGCGGTCCGCTATTTCCCGATCATCCGTCGGGCGGCGCGCCGCATGGCACGCCGACTCCCCTCACACGTATGCGTCGATGACCTCGTCGGTGCCGGGTTCGTAGGTCTCGTCAAAGCGTACCGACAGTACGACGCTGCACGCTGCGACCGTTTCGAGCCGTACGCCGAGCTTCGGATCCGCGGCGCGATGTTCGACGAGCTCCGCTCGCACGATCCACTTCCCCGCGATCTGCGCGCGATGCTTCGCAAGGCGAACATGGCCACACGGCAGCTGCAGACGCAGCTCGGCAGAGCCCCCACCGACGCCGAGGTGGCGAGCCAGCTCTCGCTACCGCTCGAGACGTATCGCCAGATCCGCGCGCTGACGGAGTTCCGTCCGATAAGCATCAATACACACGCAAATGACGACCGGGAGGCGCCGGTGGAGTTCAATGATCCGTCTGCGATCGCGGCGGACGAGGAGCTCGCGAAGGCAGACTCGAGGCGCGCGGTCGCGCAGGCCATCGAGGCACTTCCGCGACGACTTGGCCTAGTGCTGGAGCTCTACTACTGCGATGATCTGACGATGCGTCACATCGGCAGCCTGCTCGGCGTGACCGAGTCCCGCGTGTGCCAGCTTCGCGCAGAGGCTATCAAGCTCCTCCGCGCGTCCATGGGCGAGCCTCCCCGAGCGGGCGGCCTTCGTGAGCCTCGCGATGCTCGGCCCCCGCATGATGAGGCCGGCACGCGCGCTCCTCGA
PROTEIN sequence
Length: 260
MTKDLTTPHLPREIAVRYFPIIRRAARRMARRLPSHVCVDDLVGAGFVGLVKAYRQYDAARCDRFEPYAELRIRGAMFDELRSHDPLPRDLRAMLRKANMATRQLQTQLGRAPTDAEVASQLSLPLETYRQIRALTEFRPISINTHANDDREAPVEFNDPSAIAADEELAKADSRRAVAQAIEALPRRLGLVLELYYCDDLTMRHIGSLLGVTESRVCQLRAEAIKLLRASMGEPPRAGGLREPRDARPPHDEAGTRAPR