ggKbase home page

SCNpilot_expt_500_bf_scaffold_7500_5

Organism: SCNPILOT_EXPT_750_BF_Myxococcales_68_20

partial RP 37 / 55 MC: 6 BSCG 35 / 51 MC: 4 ASCG 7 / 38
Location: comp(4259..4561)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FZ22_SORC5 similarity UNIREF
DB: UNIREF100
  • Identity: 63.6
  • Coverage: 99.0
  • Bit_score: 123
  • Evalue 1.70e-25
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 63.6
  • Coverage: 99.0
  • Bit_score: 123
  • Evalue 5.40e-26
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.6
  • Coverage: 99.0
  • Bit_score: 123
  • Evalue 2.40e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sorangium cellulosum → Sorangium → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 303
GTGCAGGCGACCGTCGTGCGGGCGATGGAGCGGCACGACGATCTGCGCGAGGCGTCCAAGCTGCGTGCGTGGCTGTTACGCGTTCAGCGCTCGGTGCATCTGAACTCTGCGCGCGGGCTGCGGGCGCGCCTGGAGGTGATCGAAGGCACGCGCGCCCATGACGCTCCGCTCGAGCCGCGAGGCGACCTCGAAGCCGAGATCCTCGAACGCTCGTTCGAAGGCGACGTGCGCGCCGCTCTCGATGCTCTTCCCTCCTCCTTGCGCGATGCGCTCTTGCTACGCGAGGTCGAGGAGCTCTCGTAG
PROTEIN sequence
Length: 101
VQATVVRAMERHDDLREASKLRAWLLRVQRSVHLNSARGLRARLEVIEGTRAHDAPLEPRGDLEAEILERSFEGDVRAALDALPSSLRDALLLREVEELS*