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SCNpilot_expt_500_bf_scaffold_17189_3

Organism: SCNpilot_P_inoc_Microbacterium_67_7_partial

partial RP 9 / 55 BSCG 11 / 51 ASCG 7 / 38
Location: comp(1236..1832)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 region 2 n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=E2SDK9_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 46.9
  • Coverage: 175.0
  • Bit_score: 144
  • Evalue 1.40e-31
Sigma-70 region 2 {ECO:0000313|EMBL:EFQ82586.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.9
  • Coverage: 175.0
  • Bit_score: 144
  • Evalue 2.00e-31
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 39.7
  • Coverage: 174.0
  • Bit_score: 124
  • Evalue 3.60e-26

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Taxonomy

Aeromicrobium marinum → Aeromicrobium → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 597
GTGGCGGAGCCCGCGCGCGCGTCCCCGGATCGGCAAGATTTCGCATCGGCCGATCATGTCGAAGACGATGTGCCACTGCTGCGACGACTGCGCGATGGAGACGACACCGCTCTGAGCGAACTCCATGACCGCCACGTCCGGGCGGTGTATCTGCTCGCGCGGAGCAAGGTTGACTCCGCGTCAGACGCCGAGGAAGTGACCCAAGACGCGTTTCTGCTGTTGTGGCGCAAGTGCCGTCGTATTGACCTAACCGGCACCTCTTGCCTGCCGTGGTTGCTGACCACTGCCAACTACCTTGCCCTCAACGTTCAGCGGGCAAGTAGGCGTCTGACGCAGCGGGTCACGACTGCGCTGAGTGAAGACGACCTCACCTCCCCGCGCGAGGTGGACGCCGAAGCAGCGCGGAACATGGAACTCGAACAGGTCGTAAGGATCGTTGCGGCCCTTCCGCAGATCGACCAAGACGTATTTCGGCTCTGCGTTGTCGAGGGACTCAGCTACAAGCAGGCCGCGTACCAGCTCCGCACCAGTCACTCGGCTGTACGGAACCGCCTGTCCCGGGTGCGCGGAGCGTTGAGGAAGCAGATAGACCAATGA
PROTEIN sequence
Length: 199
VAEPARASPDRQDFASADHVEDDVPLLRRLRDGDDTALSELHDRHVRAVYLLARSKVDSASDAEEVTQDAFLLLWRKCRRIDLTGTSCLPWLLTTANYLALNVQRASRRLTQRVTTALSEDDLTSPREVDAEAARNMELEQVVRIVAALPQIDQDVFRLCVVEGLSYKQAAYQLRTSHSAVRNRLSRVRGALRKQIDQ*