ggKbase home page

SCNpilot_expt_500_bf_scaffold_18638_1

Organism: SCNPILOT_EXPT_750_P_Alphaproteobacteria_36_9_partial

partial RP 28 / 55 MC: 1 BSCG 28 / 51 MC: 2 ASCG 7 / 38
Location: comp(3..344)

Top 3 Functional Annotations

Value Algorithm Source
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.5
  • Coverage: 110.0
  • Bit_score: 111
  • Evalue 1.10e-21
RNA methyltransferase, TrmH family, group 1; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] similarity KEGG
DB: KEGG
  • Identity: 53.6
  • Coverage: 112.0
  • Bit_score: 110
  • Evalue 3.10e-22
RNA methyltransferase, TrmH family, group 1 id=4908844 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + similarity UNIREF
DB: UNIREF100
  • Identity: 55.5
  • Coverage: 110.0
  • Bit_score: 111
  • Evalue 7.60e-22

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 342
ATGATAGGCCCAGTTATTATTCTTGTTGAGTCGCAAATCCCGCAAAACATCGGGAAAACAGCGCGTGCAATGCTGAATTGTGAATTACGAGATCTTAGGCTTGTTAGACCTCTTGTCGATCCTTGCCATCGTGATGCACGGGCATTAGCGGCTGGTGCTGATGAAGTTTTGGAAAACGCGAAGATCTTTAATTCTACTGCTGAAGCAATTGCAGACCTTCATCGTGTTTTCTCAACAAGTGCTCGGCATCGAGATATGGTTGAGCTCCAGTTAACGCCTAAGAAAGCGGCAGATCTTTTTGTAACCATGGTTCAAGAAAATCATCGTGTAGGTGTTCTTTTT
PROTEIN sequence
Length: 114
MIGPVIILVESQIPQNIGKTARAMLNCELRDLRLVRPLVDPCHRDARALAAGADEVLENAKIFNSTAEAIADLHRVFSTSARHRDMVELQLTPKKAADLFVTMVQENHRVGVLF