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SCNpilot_expt_500_bf_scaffold_27459_1

Organism: SCNPILOT_EXPT_750_P_Alphaproteobacteria_36_9_partial

partial RP 28 / 55 MC: 1 BSCG 28 / 51 MC: 2 ASCG 7 / 38
Location: 1..480

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.8
  • Coverage: 154.0
  • Bit_score: 209
  • Evalue 3.10e-51
Ribosomal RNA small subunit methyltransferase E id=3202323 bin=GWA1_Alphaproteobacteria_45_9 species=Micavibrio aeruginosavorus genus=Micavibrio taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small similarity UNIREF
DB: UNIREF100
  • Identity: 48.6
  • Coverage: 138.0
  • Bit_score: 128
  • Evalue 4.90e-27
rsmE; 16S ribosomal RNA methyltransferase RsmE similarity KEGG
DB: KEGG
  • Identity: 42.8
  • Coverage: 145.0
  • Bit_score: 117
  • Evalue 3.60e-24

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Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
AGGCTAAATTTTGTGATTGAAAAATCAGTTGAACTTGGTGTTACAGAACTTATACCCATTCTAACCGATTATACACATGTACGAGAATTTAACCAAGCAAGGGCTCAAAATATTAGTATTGAAGCGGCTGAACAATGTGAGAGATTGAGTACTCCAATAATTCGCCCCCTCACAACCTTGGAAATATTTTTAAAAACCTGGCCCACCAATAAACTTATATTTATTGGTGATGAGCGTTTAACTTCTAAAAATTTGATAAAGCAAATTTTATGTGAAATGCCTTTTGAACCTTCCTTACTAATAGGTCCAGAAGGAGGTTTTAGTCCTCATGAATTTGAGATATTATCCACCTATGAATTTGTTCGTTTCGTGAGCTTAGGGCAAACTATACTGCGCGCAGAGACAGCTGCTATTGCAGGACTAGCAATCTGTCATATGGCCAAAGAACTAGGAGCATCTAATGAAAAAATTGTTTTGTAA
PROTEIN sequence
Length: 160
RLNFVIEKSVELGVTELIPILTDYTHVREFNQARAQNISIEAAEQCERLSTPIIRPLTTLEIFLKTWPTNKLIFIGDERLTSKNLIKQILCEMPFEPSLLIGPEGGFSPHEFEILSTYEFVRFVSLGQTILRAETAAIAGLAICHMAKELGASNEKIVL*