ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_300_BF_Flavobacteriales_36_9

SCNPILOT_EXPT_500_BF_STEP10_Epilithonimonas_35_3
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy: Epilithonimonas  →  Flavobacteriales  →  Flavobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 3.41 Longest contig: 7.54 Kbp Bin length: 1.27 Mbp GC content: 35.00 %
Contigs count: 639 Features count: 1711 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 21 / 55 BSCG 18 / 51 ASCG 4 / 38
Displaying items 301-350 of 639 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_30978
Species: Epilithonimonas sp. FH1 (50%)
2 1148 bp 37.72 3.27 90.42
SCNpilot_expt_500_bf_scaffold_28371
Species: Epilithonimonas sp. FH1 (50%)
2 1267 bp 37.57 2.76 97.32
SCNpilot_expt_500_bf_scaffold_28116
Species: Epilithonimonas sp. FH1 (50%)
2 1280 bp 33.91 2.73 84.38
SCNpilot_expt_500_bf_scaffold_24396
Species: Chryseobacterium piperi (50%)
2 1467 bp 37.15 3.92 90.59
SCNpilot_expt_500_bf_scaffold_25829
Species: Epilithonimonas sp. FH1 (100%)
2 1385 bp 35.67 3.25 85.99
SCNpilot_expt_500_bf_scaffold_23158
Species: Flavobacteriaceae bacterium 3519-10 (50%)
2 1537 bp 33.51 4.07 81.59
SCNpilot_expt_500_bf_scaffold_29999
Species: Psychroflexus torquis (50%)
2 1194 bp 27.05 2.93 77.39
SCNpilot_expt_500_bf_scaffold_24912
Species: Elizabethkingia anophelis (50%)
2 1437 bp 35.21 3.48 59.08
SCNpilot_expt_500_bf_scaffold_22904
Species: Epilithonimonas sp. FH1 (100%)
2 1554 bp 35.46 3.70 91.89
SCNpilot_expt_500_bf_scaffold_13770
Species: Epilithonimonas sp. FH1 (100%)
2 2550 bp 35.76 4.31 94.59
SCNpilot_expt_500_bf_scaffold_31226 2 1136 bp 41.29 2.20 96.92
SCNpilot_expt_500_bf_scaffold_32611
Species: Chryseobacterium taiwanense (100%)
2 1061 bp 35.53 3.06 99.53
SCNpilot_expt_500_bf_scaffold_41190
Species: Chryseobacterium gleum (50%)
2 1319 bp 40.18 4.17 47.31
SCNpilot_expt_500_bf_scaffold_26713
Species: Epilithonimonas lactis (100%)
2 1344 bp 36.31 3.72 89.06
SCNpilot_expt_500_bf_scaffold_22401
Species: Chryseobacterium sp. StRB126 (50%)
2 1587 bp 34.09 4.41 71.46
SCNpilot_expt_500_bf_scaffold_28643
Species: Chryseobacterium sp. P1-3 (50%)
2 1255 bp 40.16 3.19 90.84
SCNpilot_expt_500_bf_scaffold_28902
Species: Chryseobacterium gleum (50%)
2 1244 bp 30.71 2.81 84.89
SCNpilot_expt_500_bf_scaffold_23942
Species: Methanosarcina siciliae (50%)
2 1492 bp 26.41 3.18 100.13
SCNpilot_expt_500_bf_scaffold_30487
Species: Epilithonimonas lactis (50%)
2 1172 bp 36.26 3.20 79.35
SCNpilot_expt_500_bf_scaffold_35636
Species: Riemerella anatipestifer (50%)
2 2080 bp 31.49 4.45 37.36
SCNpilot_expt_500_bf_scaffold_22920
Species: Epilithonimonas lactis (50%)
2 1552 bp 39.69 3.54 64.37
SCNpilot_expt_500_bf_scaffold_20346
Species: Chryseobacterium sp. CF314 (50%)
2 1737 bp 33.05 4.03 96.55
SCNpilot_expt_500_bf_scaffold_30237
Species: Chryseobacterium jeonii (50%)
2 1184 bp 34.29 3.38 98.82
SCNpilot_expt_500_bf_scaffold_15525
Species: Epilithonimonas lactis (50%)
2 3370 bp 34.90 4.15 85.73
SCNpilot_expt_500_bf_scaffold_17550
Species: Bacteroides sp. 3_1_19 (50%)
2 2007 bp 36.87 3.24 95.96
SCNpilot_expt_500_bf_scaffold_22671
Species: Elizabethkingia anophelis (100%)
2 1569 bp 34.99 4.30 100.57
SCNpilot_expt_500_bf_scaffold_24681
Species: Epilithonimonas sp. FH1 (100%)
2 1450 bp 30.14 3.45 65.17
SCNpilot_expt_500_bf_scaffold_30498
Species: Epilithonimonas lactis (50%)
2 1171 bp 30.23 3.42 87.36
SCNpilot_expt_500_bf_scaffold_17044
Species: Epilithonimonas lactis (50%)
2 2066 bp 29.82 3.87 99.18
SCNpilot_expt_500_bf_scaffold_30247
Species: Epilithonimonas sp. FH1 (100%)
2 1183 bp 40.83 2.96 99.15
SCNpilot_expt_500_bf_scaffold_30503
Species: Zunongwangia profunda (50%)
2 1171 bp 37.40 2.99 81.47
SCNpilot_expt_500_bf_scaffold_47623
Species: GWF2_Bacteroidetes_35_48_curated (50%)
2 1153 bp 36.86 3.47 97.31
SCNpilot_expt_500_bf_scaffold_13545
Species: Epilithonimonas lactis (100%)
2 2588 bp 37.56 4.44 91.00
SCNpilot_expt_500_bf_scaffold_27826
Species: Epilithonimonas lactis (50%)
2 1294 bp 36.32 2.90 98.07
SCNpilot_expt_500_bf_scaffold_31002
Species: Epilithonimonas lactis (100%)
2 1794 bp 33.50 4.46 61.04
SCNpilot_expt_500_bf_scaffold_16890
Species: Epilithonimonas lactis (50%)
2 2087 bp 35.46 2.64 97.17
SCNpilot_expt_500_bf_scaffold_19242
Species: Chryseobacterium sp. P1-3 (50%)
2 1832 bp 36.79 3.14 75.66
SCNpilot_expt_500_bf_scaffold_25867
Species: Chryseobacterium luteum (50%)
2 1383 bp 31.38 3.98 97.83
SCNpilot_expt_500_bf_scaffold_28413
Species: Epilithonimonas lactis (100%)
2 1265 bp 34.07 4.55 77.55
SCNpilot_expt_500_bf_scaffold_24949
Species: Epilithonimonas lactis (100%)
2 1435 bp 35.61 3.31 76.31
SCNpilot_expt_500_bf_scaffold_29271
Species: Epilithonimonas lactis (50%)
2 1228 bp 34.93 3.26 87.22
SCNpilot_expt_500_bf_scaffold_29272
Species: Epilithonimonas sp. FH1 (100%)
2 1228 bp 32.08 4.07 69.14
SCNpilot_expt_500_bf_scaffold_15545
Species: Epilithonimonas sp. FH1 (50%)
2 2266 bp 34.95 3.75 90.69
SCNpilot_expt_500_bf_scaffold_20627
Species: Epilithonimonas lactis (100%)
2 1714 bp 35.36 3.21 87.34
SCNpilot_expt_500_bf_scaffold_19508
Species: Epilithonimonas sp. FH1 (50%)
2 1809 bp 38.25 4.42 85.74
SCNpilot_expt_500_bf_scaffold_23717
Species: Epilithonimonas lactis (50%)
2 1505 bp 34.49 2.66 33.69
SCNpilot_expt_500_bf_scaffold_15808
Species: Epilithonimonas sp. FH1 (50%)
2 2230 bp 34.48 2.69 92.83
SCNpilot_expt_500_bf_scaffold_20122
Species: Epilithonimonas lactis (50%)
2 1755 bp 36.24 4.56 89.57
SCNpilot_expt_500_bf_scaffold_11154
Species: Chryseobacterium formosense (50%)
2 3087 bp 32.10 3.73 76.58
SCNpilot_expt_500_bf_scaffold_24453
Species: Mucilaginibacter paludis (50%)
2 1464 bp 37.91 3.93 97.75
Displaying items 301-350 of 639 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.