ggKbase | organisms

Consensus taxonomy: Chryseobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 3.29 Longest contig: 6.10 Kbp Bin length: 799.90 Kbp GC content: 38.74 %

Contigs count: 457 Features count: 1088 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 1 BSCG 14 / 51 ASCG 4 / 38

Displaying items 251-300 of 457 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_bf_scaffold_28704 Species: Elizabethkingia anophelis (50%)	2	1252 bp	33.07	4.99	70.45
SCNpilot_expt_500_bf_scaffold_30290 Species: Chryseobacterium gleum (50%)	2	1181 bp	41.49	3.39	99.07
SCNpilot_expt_500_bf_scaffold_17602 Species: Riemerella anatipestifer (50%)	2	2001 bp	40.18	2.62	98.35
SCNpilot_expt_500_bf_scaffold_30803 Species: Chryseobacterium jeonii (50%)	2	1156 bp	36.76	3.03	92.65
SCNpilot_expt_500_bf_scaffold_25396 Species: Chryseobacterium soli (50%)	2	1408 bp	37.93	3.20	85.65
SCNpilot_expt_500_bf_scaffold_26269 Species: Chryseobacterium piperi (50%)	2	1365 bp	41.90	4.03	94.51
SCNpilot_expt_500_bf_scaffold_33573 Species: Pseudopedobacter saltans (50%)	2	1014 bp	36.69	2.71	94.67
SCNpilot_expt_500_bf_scaffold_24993 Species: Chryseobacterium sp. JM1 (50%)	2	1432 bp	38.06	3.49	64.73
SCNpilot_expt_500_bf_scaffold_25146 Species: Chryseobacterium piperi (50%)	2	1423 bp	38.23	2.64	90.44
SCNpilot_expt_500_bf_scaffold_25659 Species: Chryseobacterium jeonii (50%)	2	1957 bp	36.28	2.81	78.03
SCNpilot_expt_500_bf_scaffold_33327 Species: Chryseobacterium jeonii (50%)	2	1027 bp	43.91	2.92	99.61
SCNpilot_expt_500_bf_scaffold_27881 Species: RBG_19FT_COMBO_Aminicenantes_58_17_curated (50%)	2	1292 bp	34.75	3.68	80.81
SCNpilot_expt_500_bf_scaffold_19811 Species: Chryseobacterium solincola (50%)	2	1780 bp	38.43	3.23	91.85
SCNpilot_expt_500_bf_scaffold_21516 Species: Chryseobacterium taiwanense (50%)	2	1650 bp	42.12	3.03	87.82
SCNpilot_expt_500_bf_scaffold_26540 Species: Chryseobacterium solincola (50%)	2	1352 bp	37.65	2.77	74.33
SCNpilot_expt_500_bf_scaffold_19300 Species: Capnocytophaga canimorsus (50%)	2	1827 bp	44.28	3.28	79.31
SCNpilot_expt_500_bf_scaffold_24493 Species: Chryseobacterium antarcticum (50%)	2	2135 bp	40.47	2.93	84.59
SCNpilot_expt_500_bf_scaffold_23766 Species: Chryseobacterium jeonii (50%)	2	1502 bp	39.01	3.00	93.48
SCNpilot_expt_500_bf_scaffold_32703 Species: Chryseobacterium jeonii (50%)	2	1057 bp	41.44	3.31	96.50
SCNpilot_expt_500_bf_scaffold_30823 Species: Chryseobacterium jeonii (50%)	2	1155 bp	40.26	2.38	96.88
SCNpilot_expt_500_bf_scaffold_23512 Species: Chryseobacterium sp. StRB126 (50%)	2	1515 bp	42.18	3.63	83.37
SCNpilot_expt_500_bf_scaffold_29074 Species: Chryseobacterium antarcticum (50%)	2	1236 bp	41.02	2.43	92.96
SCNpilot_expt_500_bf_scaffold_32962 Species: Flavobacterium enshiense (50%)	2	1045 bp	34.35	2.87	80.10
SCNpilot_expt_500_bf_scaffold_28474 Species: Flavobacteriaceae bacterium 3519-10 (100%)	2	1262 bp	39.46	2.77	94.14
SCNpilot_expt_500_bf_scaffold_9690 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	3493 bp	38.16	3.79	94.90
SCNpilot_expt_500_bf_scaffold_15349 Species: Chryseobacterium solincola (50%)	2	2296 bp	39.33	3.05	98.78
SCNpilot_expt_500_bf_scaffold_26040 Species: Bizionia argentinensis (50%)	2	1375 bp	38.91	2.91	65.02
SCNpilot_expt_500_bf_scaffold_19826 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1779 bp	40.92	3.09	80.27
SCNpilot_expt_500_bf_scaffold_17381 Species: Chryseobacterium antarcticum (100%)	2	2026 bp	38.99	3.21	93.58
SCNpilot_expt_500_bf_scaffold_24510 Species: Riemerella anatipestifer (100%)	2	1460 bp	39.59	3.42	90.62
SCNpilot_expt_500_bf_scaffold_33350 Species: Chryseobacterium solincola (50%)	2	1026 bp	36.84	1.95	90.06
SCNpilot_expt_500_bf_scaffold_27647 Species: Bacteroides ovatus (50%)	2	1302 bp	37.25	3.84	92.40
SCNpilot_expt_500_bf_scaffold_28487 Species: Chryseobacterium piperi (50%)	2	1262 bp	38.27	4.16	95.56
SCNpilot_expt_500_bf_scaffold_21025 Species: Chryseobacterium antarcticum (50%)	2	1683 bp	42.48	3.12	94.30
SCNpilot_expt_500_bf_scaffold_23529 Species: Chryseobacterium jeonii (100%)	2	1515 bp	37.76	2.97	99.21
SCNpilot_expt_500_bf_scaffold_9962 Species: BJP_IG2103_Methanoregula_55_19 (50%)	2	3416 bp	26.96	3.51	99.85
SCNpilot_expt_500_bf_scaffold_23787 Species: Chryseobacterium jeonii (50%)	2	1501 bp	39.24	2.66	96.34
SCNpilot_expt_500_bf_scaffold_27396 Species: Chryseobacterium piperi (50%)	2	1313 bp	40.97	3.05	88.88
SCNpilot_expt_500_bf_scaffold_26564 Species: Chryseobacterium sp. CF314 (50%)	2	1351 bp	38.71	2.59	87.05
SCNpilot_expt_500_bf_scaffold_33870 Species: Pedobacter antarcticus (50%)	2	1001 bp	41.56	2.50	99.80
SCNpilot_expt_500_bf_scaffold_15879 Species: Sphingobacterium sp. PM2-P1-29 (100%)	2	2221 bp	40.52	2.25	96.85
SCNpilot_expt_500_bf_scaffold_27403 Species: Chryseobacterium jeonii (50%)	2	1312 bp	40.09	1.91	96.27
SCNpilot_expt_500_bf_scaffold_31348 Species: Flavobacteriaceae bacterium 3519-10 (100%)	2	1129 bp	43.49	1.77	94.60
SCNpilot_expt_500_bf_scaffold_48798 Species: Chryseobacterium solincola (50%)	2	1081 bp	40.43	3.24	94.91
SCNpilot_expt_500_bf_scaffold_31607 Species: Chryseobacterium jeonii (50%)	2	2119 bp	43.28	3.54	91.74
SCNpilot_expt_500_bf_scaffold_16215 Species: Capnocytophaga sp. oral taxon 412 (50%)	2	2176 bp	34.47	4.48	30.88
SCNpilot_expt_500_bf_scaffold_21043 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1682 bp	39.83	2.97	94.00
SCNpilot_expt_500_bf_scaffold_24534 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1458 bp	39.09	3.77	89.09
SCNpilot_expt_500_bf_scaffold_27671 Species: Chryseobacterium jeonii (50%)	2	1301 bp	43.27	2.11	90.16
SCNpilot_expt_500_bf_scaffold_21306 Species: Sphingobacterium spiritivorum (100%)	2	1664 bp	41.05	2.70	58.05

Displaying items 251-300 of 457 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_BF_INOC_Flavobacteriia_40_10) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNpilot_BF_INOC_Flavobacteriia_40_10

SCNPILOT_EXPT_500_BF_STEP10_Chryseobacterium_39_3

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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