ggKbase | organisms

Consensus taxonomy: Chryseobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 3.29 Longest contig: 6.10 Kbp Bin length: 799.90 Kbp GC content: 38.74 %

Contigs count: 457 Features count: 1088 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 1 BSCG 14 / 51 ASCG 4 / 38

Displaying items 301-350 of 457 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_bf_scaffold_26074 Species: Chryseobacterium jeonii (50%)	2	1373 bp	37.58	3.28	93.74
SCNpilot_expt_500_bf_scaffold_23555 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1514 bp	41.15	2.81	99.67
SCNpilot_expt_500_bf_scaffold_20983 Species: Mucilaginibacter paludis (50%)	2	1687 bp	38.17	2.37	99.23
SCNpilot_expt_500_bf_scaffold_28008 Species: GWF2_Bacteroidetes_35_48_curated (50%)	2	1286 bp	31.49	3.89	59.49
SCNpilot_expt_500_bf_scaffold_24802 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1443 bp	42.20	3.12	87.94
SCNpilot_expt_500_bf_scaffold_21063 Species: Chryseobacterium jeonii (50%)	2	1681 bp	39.56	2.97	97.80
SCNpilot_expt_500_bf_scaffold_27944 Species: Aequorivita sublithincola (50%)	2	1289 bp	40.03	3.10	98.22
SCNpilot_expt_500_bf_scaffold_20992 Species: Chryseobacterium antarcticum (50%)	2	1686 bp	41.34	2.67	100.18
SCNpilot_expt_500_bf_scaffold_26856 Species: Arcticibacter svalbardensis (50%)	2	1338 bp	39.69	3.36	88.57
SCNpilot_expt_500_bf_scaffold_14962 Species: Chryseobacterium formosense (50%)	2	2355 bp	41.78	3.82	94.14
SCNpilot_expt_500_bf_scaffold_26603 Species: Chryseobacterium jeonii (50%)	2	1349 bp	42.33	3.15	51.59
SCNpilot_expt_500_bf_scaffold_27436 Species: Chryseobacterium sp. CF314 (50%)	2	2314 bp	34.79	2.81	53.41
SCNpilot_expt_500_bf_scaffold_26348 Species: Riemerella anatipestifer (50%)	2	1362 bp	41.85	4.04	85.68
SCNpilot_expt_500_bf_scaffold_31124 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1141 bp	38.04	5.26	87.82
SCNpilot_expt_500_bf_scaffold_19620 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1798 bp	38.99	2.92	93.10
SCNpilot_expt_500_bf_scaffold_30373 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1177 bp	42.65	2.76	94.56
SCNpilot_expt_500_bf_scaffold_36267 Species: Niabella soli (50%)	2	1470 bp	44.01	2.55	103.47
SCNpilot_expt_500_bf_scaffold_46290 Species: Chryseobacterium jeonii (50%)	2	1202 bp	41.26	2.91	46.42
SCNpilot_expt_500_bf_scaffold_32259 Species: Chryseobacterium taiwanense (50%)	2	1080 bp	41.85	2.78	95.83
SCNpilot_expt_500_bf_scaffold_28544 Species: Chryseobacterium gleum (50%)	2	1259 bp	40.59	3.57	99.60
SCNpilot_expt_500_bf_scaffold_33408 Species: Chryseobacterium solincola (50%)	2	1023 bp	36.17	3.42	82.70
SCNpilot_expt_500_bf_scaffold_23073 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	2449 bp	37.48	2.86	63.58
SCNpilot_expt_500_bf_scaffold_28034 Species: Chryseobacterium jeonii (50%)	2	1285 bp	38.52	3.70	94.09
SCNpilot_expt_500_bf_scaffold_12354 Species: Chryseobacterium antarcticum (50%)	2	2809 bp	33.43	3.56	69.63
SCNpilot_expt_500_bf_scaffold_32779 Species: Chryseobacterium solincola (100%)	2	1053 bp	40.55	1.66	86.04
SCNpilot_expt_500_bf_scaffold_31908 Species: Sphingobacterium spiritivorum (100%)	2	1099 bp	31.21	2.96	99.64
SCNpilot_expt_500_bf_scaffold_23844 Species: Elizabethkingia anophelis (50%)	2	1497 bp	38.14	2.67	86.57
SCNpilot_expt_500_bf_scaffold_24061 Species: Chryseobacterium indologenes (50%)	2	1484 bp	44.47	9.60	77.83
SCNpilot_expt_500_bf_scaffold_25238 Species: Chryseobacterium jeonii (50%)	2	1417 bp	36.84	3.00	100.14
SCNpilot_expt_500_bf_scaffold_21599 Species: Chryseobacterium jeonii (50%)	2	1643 bp	40.78	3.50	89.65
SCNpilot_expt_500_bf_scaffold_27970 Species: Chryseobacterium sp. P1-3 (50%)	2	1288 bp	38.28	2.14	79.66
SCNpilot_expt_500_bf_scaffold_14730 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	2393 bp	42.75	3.13	92.77
SCNpilot_expt_500_bf_scaffold_21347 Species: Epilithonimonas lactis (50%)	2	2462 bp	39.36	2.74	50.69
SCNpilot_expt_500_bf_scaffold_29415 Species: Chryseobacterium jeonii (50%)	2	1221 bp	39.80	3.07	66.34
SCNpilot_expt_500_bf_scaffold_33170 Species: Epilithonimonas lactis (50%)	2	1035 bp	40.68	5.07	91.59
SCNpilot_expt_500_bf_scaffold_24335 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1471 bp	41.13	2.21	90.96
SCNpilot_expt_500_bf_scaffold_23607 Species: Chryseobacterium jeonii (100%)	2	1511 bp	42.75	2.65	80.41
SCNpilot_expt_500_bf_scaffold_24337 Species: Jejuia pallidilutea (50%)	2	1471 bp	42.69	3.23	98.10
SCNpilot_expt_500_bf_scaffold_23865 Species: Chryseobacterium oranimense (50%)	2	1496 bp	40.78	3.34	95.05
SCNpilot_expt_500_bf_scaffold_32035 Species: Chryseobacterium sp. CF314 (50%)	2	1092 bp	40.29	3.66	98.63
SCNpilot_expt_500_bf_scaffold_32803 Species: Chryseobacterium jeonii (50%)	2	1052 bp	41.92	3.33	85.55
SCNpilot_expt_500_bf_scaffold_30414 Species: Chryseobacterium antarcticum (50%)	2	1176 bp	41.75	2.34	95.92
SCNpilot_expt_500_bf_scaffold_28063 Species: Chryseobacterium solincola (50%)	2	1283 bp	42.71	2.73	90.72
SCNpilot_expt_500_bf_scaffold_18249 Species: Chryseobacterium sp. CF314 (50%)	2	1930 bp	39.59	2.98	99.79
SCNpilot_expt_500_bf_scaffold_32556 Species: Chryseobacterium jeonii (50%)	2	1064 bp	41.45	3.05	99.53
SCNpilot_expt_500_bf_scaffold_22341 Species: Clostridium sp. CAG:62 (50%)	2	1590 bp	38.05	3.30	90.38
SCNpilot_expt_500_bf_scaffold_33190 Species: Chryseobacterium taiwanense (50%)	2	1033 bp	41.14	2.90	93.80
SCNpilot_expt_500_bf_scaffold_32303 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1077 bp	40.48	3.71	92.20
SCNpilot_expt_500_bf_scaffold_32560 Species: Flavobacterium sp. 316 (50%)	2	1064 bp	38.35	2.35	84.30
SCNpilot_expt_500_bf_scaffold_26400 Species: Chryseobacterium piperi (50%)	2	1359 bp	38.56	2.94	80.57

Displaying items 301-350 of 457 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_BF_INOC_Flavobacteriia_40_10) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_BF_INOC_Flavobacteriia_40_10

SCNPILOT_EXPT_500_BF_STEP10_Chryseobacterium_39_3

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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