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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 8051-8100 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_13797 9 6277 bp 33.12 88.30 81.82
SCNpilot_expt_500_p_scaffold_11633
Species: Anabaena cylindrica (100%)
1 3974 bp 30.67 107.26 81.83
SCNpilot_expt_500_p_scaffold_1732 7 17707 bp 32.16 112.78 81.83
SCNpilot_expt_500_p_scaffold_15775
Species: Lottia gigantea (50%)
4 3639 bp 35.61 94.46 81.86
SCNpilot_expt_500_p_scaffold_3646
Species: Adineta vaga (50%)
8 9036 bp 33.28 110.14 81.87
SCNpilot_expt_500_p_scaffold_21298 5 2647 bp 33.77 91.14 81.94
SCNpilot_expt_500_p_scaffold_49067
Species: Hydra vulgaris (100%)
1 1142 bp 35.90 48.60 81.96
SCNpilot_expt_500_p_scaffold_8719
Domain: Bacteria (57.14%)
7 4912 bp 36.64 108.61 81.96
SCNpilot_expt_500_p_scaffold_4121
Order: Rhabditida (50%)
4 8329 bp 35.39 104.03 82.01
SCNpilot_expt_500_p_scaffold_16923
Domain: Metazoa (50%)
4 2948 bp 34.26 104.82 82.02
SCNpilot_expt_500_p_scaffold_20403
Species: Adineta vaga (100%)
1 2520 bp 31.67 117.56 82.02
SCNpilot_expt_500_p_scaffold_20801 4 2476 bp 33.28 107.73 82.03
SCNpilot_expt_500_p_scaffold_1792
Domain: Metazoa (55%)
20 14611 bp 36.51 108.75 82.05
SCNpilot_expt_500_p_scaffold_23362
Species: Shewanella pealeana (50%)
2 2471 bp 34.88 110.79 82.07
SCNpilot_expt_500_p_scaffold_6102 3 6320 bp 32.03 98.18 82.07
SCNpilot_expt_500_p_scaffold_48991 2 1144 bp 32.43 126.31 82.08
SCNpilot_expt_500_p_scaffold_57075
Species: RBG_16_Actinobacteria_70_17_curated (50%)
2 1005 bp 33.93 104.98 82.09
SCNpilot_expt_500_p_scaffold_22131
Class: Neoptera (50%)
4 2346 bp 30.48 105.29 82.10
SCNpilot_expt_500_p_scaffold_24613 4 2130 bp 38.31 81.10 82.11
SCNpilot_expt_500_p_scaffold_5690
Species: Philodina roseola (50%)
2 6653 bp 31.85 49.45 82.11
SCNpilot_expt_500_p_scaffold_30793 5 3784 bp 30.34 189.42 82.14
SCNpilot_expt_500_p_scaffold_45148
Species: Adineta vaga (50%)
2 1227 bp 31.78 149.14 82.15
SCNpilot_expt_500_p_scaffold_14851 6 3275 bp 36.89 201.98 82.17
SCNpilot_expt_500_p_scaffold_34866
Domain: Metazoa (66.67%)
3 1548 bp 33.91 98.35 82.17
SCNpilot_expt_500_p_scaffold_15736 7 4100 bp 31.88 105.67 82.17
SCNpilot_expt_500_p_scaffold_2012 10 13508 bp 31.60 99.77 82.17
SCNpilot_expt_500_p_scaffold_46749
Species: Adineta vaga (66.67%)
3 2091 bp 32.28 49.86 82.21
SCNpilot_expt_500_p_scaffold_5103
Species: Stegodyphus mimosarum (100%)
1 7618 bp 33.71 106.46 82.23
SCNpilot_expt_500_p_scaffold_34486
Species: Adineta vaga (50%)
2 1565 bp 24.86 43.45 82.24
SCNpilot_expt_500_p_scaffold_62565
Species: Oscillatoria acuminata (50%)
2 1211 bp 41.12 80.51 82.25
SCNpilot_expt_500_p_scaffold_15004
Species: Crassostrea gigas (66.67%)
3 3250 bp 33.69 103.31 82.25
SCNpilot_expt_500_p_scaffold_32783 2 1641 bp 37.36 105.42 82.27
SCNpilot_expt_500_p_scaffold_22414
Species: Adineta vaga (50%)
4 2319 bp 29.75 93.14 82.28
SCNpilot_expt_500_p_scaffold_31554
Species: Nematostella vectensis (50%)
2 1699 bp 32.49 109.92 82.28
SCNpilot_expt_500_p_scaffold_14775 4 3291 bp 34.28 108.40 82.32
SCNpilot_expt_500_p_scaffold_3034 16 14577 bp 30.75 108.18 82.32
SCNpilot_expt_500_p_scaffold_45113 1 1228 bp 33.55 68.81 82.33
SCNpilot_expt_500_p_scaffold_39487
Species: Arion vulgaris (50%)
2 1381 bp 33.31 102.64 82.33
SCNpilot_expt_500_p_scaffold_24442
Species: Agarivorans albus (50%)
2 2145 bp 35.20 93.82 82.38
SCNpilot_expt_500_p_scaffold_45136 3 1227 bp 37.08 74.57 82.40
SCNpilot_expt_500_p_scaffold_8507 5 7744 bp 30.50 127.32 82.40
SCNpilot_expt_500_p_scaffold_12884 4 3666 bp 33.88 95.27 82.41
SCNpilot_expt_500_p_scaffold_31321
Species: Pseudomonas aeruginosa (50%)
2 1711 bp 32.20 99.94 82.41
SCNpilot_expt_500_p_scaffold_7799 6 6218 bp 32.00 96.61 82.45
SCNpilot_expt_500_p_scaffold_35893
Species: Capitella teleta (66.67%)
3 2012 bp 33.65 116.55 82.46
SCNpilot_expt_500_p_scaffold_20390
Species: Caldicellulosiruptor owensensis (100%)
1 2521 bp 34.07 94.61 82.47
SCNpilot_expt_500_p_scaffold_21349
Species: Acyrthosiphon pisum (50%)
2 2419 bp 32.29 48.37 82.47
SCNpilot_expt_500_p_scaffold_10549
Domain: Metazoa (50%)
6 5193 bp 35.07 102.73 82.50
SCNpilot_expt_500_p_scaffold_43190
Species: Portunus pelagicus (100%)
1 1276 bp 39.73 101.29 82.52
SCNpilot_expt_500_p_scaffold_7229 7 5631 bp 36.65 106.64 82.53
Displaying items 8051-8100 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.