ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 5.37 Longest contig: 20.37 Kbp Bin length: 1.09 Mbp GC content: 69.36 %

Contigs count: 654 Features count: 1530 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 15 / 55 BSCG 19 / 51 ASCG 5 / 38 MC: 1

Displaying items 451-500 of 654 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_p_scaffold_33553 Species: Microbacterium ginsengisoli (100%)	2	1606 bp	68.56	7.32	77.15
SCNpilot_expt_500_p_scaffold_48259 Species: Microbacterium mangrovi (50%)	2	1159 bp	70.66	4.75	94.48
SCNpilot_expt_500_p_scaffold_27333 Species: Microbacterium oleivorans (50%)	2	1936 bp	68.44	3.62	98.40
SCNpilot_expt_500_p_scaffold_29167 Species: Microbacterium sp. oral taxon 186 (50%)	2	1825 bp	71.78	6.58	68.55
SCNpilot_expt_500_p_scaffold_30663 Species: Microbacterium sp. TS-1 (50%)	2	1746 bp	67.47	3.01	94.16
SCNpilot_expt_500_p_scaffold_51958 Species: Microbacterium laevaniformans (50%)	2	1088 bp	69.21	4.60	88.79
SCNpilot_expt_500_p_scaffold_57150 Species: Microbacterium sp. MRS-1 (50%)	2	1003 bp	70.99	5.48	97.51
SCNpilot_expt_500_p_scaffold_49174 Species: Microbacterium laevaniformans (50%)	2	1140 bp	70.96	3.07	96.05
SCNpilot_expt_500_p_scaffold_50710 Species: Microbacterium sp. C448 (50%)	2	1111 bp	71.56	3.15	89.11
SCNpilot_expt_500_p_scaffold_54479 Species: Microbacterium hominis (50%)	2	1045 bp	74.16	4.31	99.04
SCNpilot_expt_500_p_scaffold_30921 Species: Microbacterium sp. MRS-1 (50%)	2	1732 bp	68.48	4.33	100.12
SCNpilot_expt_500_p_scaffold_25402 Species: Microbacterium sp. TS-1 (50%)	2	2070 bp	69.66	5.92	98.12
SCNpilot_expt_500_p_scaffold_46241 Species: Streptosporangium roseum (50%)	2	1202 bp	66.47	2.08	100.08
SCNpilot_expt_500_p_scaffold_33563 Species: Microbacterium sp. oral taxon 186 (100%)	2	1605 bp	68.29	4.36	99.07
SCNpilot_expt_500_p_scaffold_54739 Species: Microbacterium laevaniformans (50%)	2	1041 bp	69.36	2.16	100.00
SCNpilot_expt_500_p_scaffold_28334 Species: Microbacterium sp. oral taxon 186 (50%)	2	1873 bp	67.59	5.87	78.48
SCNpilot_expt_500_p_scaffold_47805 Species: Microbacterium mangrovi (50%)	2	1168 bp	70.80	3.42	87.33
SCNpilot_expt_500_p_scaffold_53301 Species: Microbacterium sp. C448 (50%)	2	1065 bp	71.64	7.04	92.68
SCNpilot_expt_500_p_scaffold_40174 Species: Microbacterium sp. C448 (50%)	2	1359 bp	67.11	5.89	96.47
SCNpilot_expt_500_p_scaffold_42342 Species: Microbacterium sp. MRS-1 (100%)	2	1298 bp	70.57	5.01	89.21
SCNpilot_expt_500_p_scaffold_36481 Species: Microbacterium sp. MRS-1 (50%)	2	1485 bp	69.09	4.38	93.33
SCNpilot_expt_500_p_scaffold_42344 Species: Microbacterium laevaniformans (100%)	2	1297 bp	69.08	4.63	87.66
SCNpilot_expt_500_p_scaffold_32284 Species: Microbacterium oleivorans (50%)	2	1664 bp	73.56	2.25	91.23
SCNpilot_expt_500_p_scaffold_35988 Species: Microbacterium laevaniformans (50%)	2	1505 bp	68.84	3.99	84.72
SCNpilot_expt_500_p_scaffold_44371 Species: Microbacterium sp. oral taxon 186 (50%)	2	1246 bp	69.98	4.82	92.46
SCNpilot_expt_500_p_scaffold_26214 Species: Microbacterium hominis (100%)	2	2010 bp	72.89	11.69	93.43
SCNpilot_expt_500_p_scaffold_43997 Species: Microbacterium mangrovi (50%)	2	1254 bp	67.38	2.39	96.89
SCNpilot_expt_500_p_scaffold_47045 Species: Microbacterium sp. MRS-1 (50%)	2	1185 bp	73.67	4.22	100.25
SCNpilot_expt_500_p_scaffold_42605 Species: Microbacterium mangrovi (50%)	2	1291 bp	68.16	3.87	90.40
SCNpilot_expt_500_p_scaffold_50213 Species: Microbacterium sp. oral taxon 186 (50%)	2	1120 bp	68.75	3.35	96.16
SCNpilot_expt_500_p_scaffold_50469 Species: Microbacterium oleivorans (50%)	2	1116 bp	72.94	4.48	73.66
SCNpilot_expt_500_p_scaffold_38655 Species: Microbacterium laevaniformans (50%)	2	1408 bp	67.97	2.31	91.41
SCNpilot_expt_500_p_scaffold_37775 Species: Microbacterium sp. TS-1 (50%)	2	1439 bp	68.87	4.00	85.48
SCNpilot_expt_500_p_scaffold_48022 Species: Microbacterium sp. oral taxon 186 (50%)	2	1164 bp	70.36	3.87	87.11
SCNpilot_expt_500_p_scaffold_57167 Species: Microbacterium sp. oral taxon 186 (50%)	2	1003 bp	68.39	3.74	99.60
SCNpilot_expt_500_p_scaffold_53823 Species: Microbacterium sp. oral taxon 186 (50%)	2	1056 bp	73.01	3.79	91.19
SCNpilot_expt_500_p_scaffold_41416 Species: Streptomyces fradiae (50%)	2	1323 bp	69.54	5.48	91.16
SCNpilot_expt_500_p_scaffold_46513 Species: BJP_08E140C01_Actinomycetales_70_11 (50%)	2	1196 bp	64.80	2.51	99.33
SCNpilot_expt_500_p_scaffold_47817 Species: Microbacterium testaceum (50%)	2	1168 bp	69.35	2.35	94.52
SCNpilot_expt_500_p_scaffold_51722 Species: Actinomyces massiliensis (50%)	2	1092 bp	69.78	4.12	82.97
SCNpilot_expt_500_p_scaffold_46258 Species: Microbacterium laevaniformans (100%)	2	1202 bp	68.55	7.49	88.60
SCNpilot_expt_500_p_scaffold_46259 Species: Arthrobacter chlorophenolicus (50%)	2	1202 bp	63.98	3.74	78.62
SCNpilot_expt_500_p_scaffold_28349 Species: Microbacterium sp. TS-1 (50%)	2	1872 bp	69.55	5.21	100.16
SCNpilot_expt_500_p_scaffold_41676 Species: Microbacterium sp. C448 (50%)	2	1316 bp	66.41	3.04	70.44
SCNpilot_expt_500_p_scaffold_26735 Species: Microbacterium hominis (50%)	2	1976 bp	73.38	5.19	100.05
SCNpilot_expt_500_p_scaffold_53830 Species: Cellulomonas fimi (50%)	2	1056 bp	66.76	3.55	100.00
SCNpilot_expt_500_p_scaffold_46007 Species: Microbacterium maritypicum (50%)	2	1207 bp	68.85	2.90	84.76
SCNpilot_expt_500_p_scaffold_41681 Species: Microbacterium sp. MRS-1 (50%)	2	1316 bp	72.64	5.32	94.15
SCNpilot_expt_500_p_scaffold_20387 Species: Microbacterium sp. oral taxon 186 (50%)	2	2521 bp	68.58	4.96	99.84
SCNpilot_expt_500_p_scaffold_51219 Species: Microbacterium laevaniformans (50%)	2	1102 bp	70.87	3.86	91.20

Displaying items 451-500 of 654 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Microbacterium_69_20) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_EXPT_500_P_Microbacterium_69_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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