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SCNpilot_P_inoc_Microbacterium_69_20

SCNPILOT_EXPT_500_P_Microbacterium_69_5
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Microbacterium  →  Actinomycetales  →  Actinobacteridae  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 5.37 Longest contig: 20.37 Kbp Bin length: 1.09 Mbp GC content: 69.36 %
Contigs count: 654 Features count: 1530 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 15 / 55 BSCG 19 / 51 ASCG 5 / 38 MC: 1
Displaying items 1-50 of 654 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_27659
Species: Microbacterium oleivorans (50%)
2 1916 bp 68.32 3.65 108.51
SCNpilot_expt_500_p_scaffold_50669
Species: Microbacterium oleivorans (50%)
4 1112 bp 67.63 4.72 105.22
SCNpilot_expt_500_p_scaffold_34414
Genus: Microbacterium (66.67%)
3 1568 bp 62.95 3.35 101.79
SCNpilot_expt_500_p_scaffold_49784
Species: Microbacterium laevaniformans (50%)
2 1129 bp 69.35 10.19 101.51
SCNpilot_expt_500_p_scaffold_57243
Species: Microbacterium hominis (50%)
2 1002 bp 70.06 2.99 101.50
SCNpilot_expt_500_p_scaffold_49760
Species: Brachybacterium muris (50%)
2 1129 bp 60.76 3.10 100.97
SCNpilot_expt_500_p_scaffold_43875
Species: Cellulomonas fimi (50%)
2 1257 bp 73.35 1.59 100.96
SCNpilot_expt_500_p_scaffold_27501
Species: Microbacterium sp. TS-1 (50%)
2 1925 bp 69.71 6.23 100.83
SCNpilot_expt_500_p_scaffold_44824
Species: Microbacterium hominis (50%)
2 1235 bp 69.31 6.28 100.81
SCNpilot_expt_500_p_scaffold_26625
Species: Microbacterium testaceum (50%)
2 1983 bp 69.69 2.02 100.76
SCNpilot_expt_500_p_scaffold_46983
Class: Actinobacteria (66.67%)
3 1186 bp 67.62 2.95 100.68
SCNpilot_expt_500_p_scaffold_27430
Species: Microbacterium hominis (66.67%)
3 1930 bp 70.88 5.70 100.57
SCNpilot_expt_500_p_scaffold_50292
Species: Microbacterium sp. C448 (50%)
2 1119 bp 65.77 2.68 100.54
SCNpilot_expt_500_p_scaffold_35897
Species: Microbacterium sp. oral taxon 186 (50%)
4 1508 bp 70.03 5.31 100.46
SCNpilot_expt_500_p_scaffold_52332
Genus: Microbacterium (66.67%)
3 1081 bp 71.14 5.55 100.46
SCNpilot_expt_500_p_scaffold_11830
Species: Microbacterium sp. oral taxon 186 (50%)
4 3921 bp 69.75 4.65 100.46
SCNpilot_expt_500_p_scaffold_26359
Genus: Microbacterium (100%)
3 2002 bp 70.68 4.50 100.40
SCNpilot_expt_500_p_scaffold_35344
Species: Microbacterium sp. oral taxon 186 (100%)
2 1530 bp 66.60 3.27 100.39
SCNpilot_expt_500_p_scaffold_28897
Species: Microbacterium sp. C448 (66.67%)
3 1841 bp 74.69 6.25 100.38
SCNpilot_expt_500_p_scaffold_53878
Species: Microbacterium sp. CH12i (50%)
2 1055 bp 69.10 2.13 100.38
SCNpilot_expt_500_p_scaffold_53674
Species: Gordonia soli (100%)
2 1058 bp 65.22 6.38 100.38
SCNpilot_expt_500_p_scaffold_27364
Genus: Microbacterium (75%)
4 1934 bp 70.89 4.14 100.36
SCNpilot_expt_500_p_scaffold_45577
Species: Microbacterium sp. oral taxon 186 (50%)
2 1217 bp 70.75 4.52 100.33
SCNpilot_expt_500_p_scaffold_29025
Species: Microbacterium sp. C448 (66.67%)
3 1833 bp 70.59 4.36 100.33
SCNpilot_expt_500_p_scaffold_23699
Species: marine actinobacterium PHSC20C1 (66.67%)
3 2204 bp 67.06 4.08 100.32
SCNpilot_expt_500_p_scaffold_39925
Species: Microbacterium sp. MRS-1 (66.67%)
3 1367 bp 71.47 4.39 100.29
SCNpilot_expt_500_p_scaffold_39432
Genus: Microbacterium (66.67%)
3 1382 bp 68.16 1.99 100.29
SCNpilot_expt_500_p_scaffold_30533
Genus: Microbacterium (100%)
3 1753 bp 71.93 3.99 100.29
SCNpilot_expt_500_p_scaffold_38031
Genus: Microbacterium (66.67%)
3 1430 bp 73.43 4.90 100.28
SCNpilot_expt_500_p_scaffold_38043
Genus: Microbacterium (66.67%)
3 1430 bp 65.87 2.80 100.28
SCNpilot_expt_500_p_scaffold_29159
Species: Microbacterium sp. UCD-TDU (66.67%)
3 1825 bp 67.73 3.01 100.27
SCNpilot_expt_500_p_scaffold_48473
Species: Microbacterium hominis (50%)
2 1155 bp 71.60 2.16 100.26
SCNpilot_expt_500_p_scaffold_48478
Species: Microbacterium sp. MRS-1 (50%)
2 1155 bp 72.73 6.06 100.26
SCNpilot_expt_500_p_scaffold_47045
Species: Microbacterium sp. MRS-1 (50%)
2 1185 bp 73.67 4.22 100.25
SCNpilot_expt_500_p_scaffold_46613
Species: Microbacterium sp. oral taxon 186 (50%)
2 1194 bp 74.87 2.09 100.25
SCNpilot_expt_500_p_scaffold_44258
Species: Microbacterium laevaniformans (50%)
2 1248 bp 68.83 4.01 100.24
SCNpilot_expt_500_p_scaffold_43885
Species: Jonesia denitrificans (66.67%)
3 1257 bp 65.55 3.38 100.24
SCNpilot_expt_500_p_scaffold_41518
Species: Microbacterium laevaniformans (50%)
2 1320 bp 73.94 7.58 100.23
SCNpilot_expt_500_p_scaffold_40301
Species: Microbacterium hominis (50%)
2 1356 bp 72.12 2.40 100.22
SCNpilot_expt_500_p_scaffold_33172
Species: Microbacterium sp. TS-1 (50%)
2 1623 bp 71.60 3.70 100.18
SCNpilot_expt_500_p_scaffold_32971
Species: Microbacterium azadirachtae (50%)
2 1632 bp 66.67 4.60 100.18
SCNpilot_expt_500_p_scaffold_51019
Species: Microbacterium hominis (50%)
2 1105 bp 70.68 6.56 100.18
SCNpilot_expt_500_p_scaffold_49271
Species: Saccharothrix espanaensis (50%)
2 1138 bp 67.57 3.95 100.18
SCNpilot_expt_500_p_scaffold_17493
Species: Microbacterium hominis (66.67%)
3 2872 bp 72.14 4.35 100.17
SCNpilot_expt_500_p_scaffold_46819
Species: Microbacterium sp. MRS-1 (50%)
2 1189 bp 73.25 5.47 100.17
SCNpilot_expt_500_p_scaffold_46554
Species: Microbacterium sp. C448 (50%)
2 1195 bp 69.12 5.02 100.17
SCNpilot_expt_500_p_scaffold_45999
Species: Streptomyces sp. JS01 (50%)
2 1207 bp 70.34 4.35 100.17
SCNpilot_expt_500_p_scaffold_45754
Species: Microbacterium mangrovi (50%)
2 1213 bp 68.01 4.12 100.16
SCNpilot_expt_500_p_scaffold_45354
Species: Microbacterium oleivorans (50%)
2 1222 bp 70.62 4.09 100.16
SCNpilot_expt_500_p_scaffold_28349
Species: Microbacterium sp. TS-1 (50%)
2 1872 bp 69.55 5.21 100.16
Displaying items 1-50 of 654 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.