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SCNpilot_expt_500_p_scaffold_28090_2

Organism: SCNPILOT_EXPT_1000_BF_Burkholderiales_68_66

partial RP 29 / 55 MC: 3 BSCG 30 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: comp(866..1420)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=5079423 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 41.3
  • Coverage: 179.0
  • Bit_score: 121
  • Evalue 9.10e-25
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 39.8
  • Coverage: 176.0
  • Bit_score: 120
  • Evalue 6.40e-25
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 42.2
  • Coverage: 173.0
  • Bit_score: 130
  • Evalue 2.80e-27

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Taxonomy

R_Betaproteobacteria_64_12 → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGAGTGTTTCCGCCCCCCGCCTGACGGCATCGGCGCCGAGCCCTGCGGAGCTGGTCGCGCATCGCAGCGCGATGCTGCGCTTCGCCCGGCGCAGGATCCGCGACGAGGAGCTCGCCGAGGACGCGGTGCAGGACGCCCTGGTGGCAGCTCTCTCGAACCTCGGCTCGTTCCAGGGCCAGTCGGCGCTGCGCACCTGGCTGATCGGCATCCTGAACCACAAGATCCAGGACACCTTCCGCCGCGAAGGGCGCTACGTGCAGGTGGACGACGCGGGCCGCGGCGAGGGTGCCGACGACGGGCTCGACCGCCTGGCGCAGCCCGCCTTCGACGATCCGGCCCTGGGCGTGGCCAGGGCGCGGCTGCGCGACGCGCTGCTCGGCGAGATCGAGGCGCTGCCGCCCACGCTGCGCGAAGTGTTCGTGATGCAGGTGCTCGAGGGCCGCGAGACGGCGCAGGTGTGCCAGCGGCTGGGCATCACCGAGGCCAACTGCTGGGTGCGGCTGCACCGGGCGCGCAAGCGCCTGTCGGAGCGCATGCGCGACCATCTCTCCTGA
PROTEIN sequence
Length: 185
MSVSAPRLTASAPSPAELVAHRSAMLRFARRRIRDEELAEDAVQDALVAALSNLGSFQGQSALRTWLIGILNHKIQDTFRREGRYVQVDDAGRGEGADDGLDRLAQPAFDDPALGVARARLRDALLGEIEALPPTLREVFVMQVLEGRETAQVCQRLGITEANCWVRLHRARKRLSERMRDHLS*