ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_300_BF_Burkholderiales_67_33

SCNPILOT_EXPT_500_P_Burkholderiales_67_5
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 5.00 Longest contig: 15.91 Kbp Bin length: 2.37 Mbp GC content: 66.77 %
Contigs count: 1490 Features count: 3506 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 20 / 55 MC: 2 BSCG 23 / 51 MC: 1 ASCG 5 / 38
Displaying items 1-50 of 1490 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_35786
Species: Ralstonia sp. GA3-3 (50%)
2 1512 bp 66.47 5.29 106.15
SCNpilot_expt_500_p_scaffold_40780
Species: Ramlibacter tataouinensis (50%)
2 1342 bp 71.61 4.84 103.73
SCNpilot_expt_500_p_scaffold_51531
Species: Achromobacter xylosoxidans (50%)
2 1096 bp 70.44 3.65 103.19
SCNpilot_expt_500_p_scaffold_35315
Species: Bordetella bronchiseptica (50%)
2 1531 bp 71.39 4.57 103.07
SCNpilot_expt_500_p_scaffold_25462
Order: Xanthomonadales (66.67%)
3 2066 bp 68.49 4.11 102.37
SCNpilot_expt_500_p_scaffold_40785
Species: Bordetella hinzii (50%)
2 1341 bp 72.86 4.47 102.01
SCNpilot_expt_500_p_scaffold_46808
Species: Enterobacter cancerogenus (50%)
2 1190 bp 69.83 2.52 101.85
SCNpilot_expt_500_p_scaffold_42088
Genus: Burkholderia (66.67%)
3 1304 bp 68.48 4.98 101.69
SCNpilot_expt_500_p_scaffold_38784
Species: Bradyrhizobium sp. DFCI-1 (50%)
2 1403 bp 71.35 3.21 101.35
SCNpilot_expt_500_p_scaffold_55025
Species: Burkholderia sp. SJ98 (50%)
2 1036 bp 70.95 2.41 101.35
SCNpilot_expt_500_p_scaffold_31388
Order: Burkholderiales (66.67%)
3 1708 bp 67.45 6.29 101.17
SCNpilot_expt_500_p_scaffold_33700
Species: Serpens flexibilis (50%)
2 1599 bp 68.92 4.07 101.13
SCNpilot_expt_500_p_scaffold_54699
Species: Acetobacteraceae bacterium AT-5844 (100%)
2 1042 bp 66.22 1.44 101.06
SCNpilot_expt_500_p_scaffold_41061
Species: GWA2_Curvibacter_64_110_curated (50%)
2 1333 bp 71.19 3.00 101.05
SCNpilot_expt_500_p_scaffold_43194
Species: Bordetella petrii (50%)
2 1275 bp 73.10 4.31 100.94
SCNpilot_expt_500_p_scaffold_37097
Species: Herbaspirillum sp. YR522 (100%)
3 1463 bp 69.17 3.08 100.89
SCNpilot_expt_500_p_scaffold_56829
Species: Nitrosococcus halophilus (50%)
2 1009 bp 60.56 5.95 100.79
SCNpilot_expt_500_p_scaffold_37817
Phylum: Proteobacteria (66.67%)
3 1438 bp 68.64 2.96 100.76
SCNpilot_expt_500_p_scaffold_34242
Species: Cupriavidus pinatubonensis (50%)
2 1575 bp 68.06 2.06 100.76
SCNpilot_expt_500_p_scaffold_33629
Species: Oligella urethralis (50%)
2 1602 bp 71.10 4.68 100.75
SCNpilot_expt_500_p_scaffold_53015
Species: Achromobacter piechaudii (50%)
2 1069 bp 70.25 2.81 100.75
SCNpilot_expt_500_p_scaffold_26031
Species: Bordetella hinzii (66.67%)
3 2026 bp 70.24 4.69 100.69
SCNpilot_expt_500_p_scaffold_41300
Species: R_Betaproteobacteria_65_24 (50%)
2 1326 bp 69.31 5.28 100.68
SCNpilot_expt_500_p_scaffold_54987
Species: Hydrogenophaga sp. PBC (50%)
2 1037 bp 68.85 2.89 100.68
SCNpilot_expt_500_p_scaffold_40706
Species: Comamonas testosteroni (50%)
2 1344 bp 72.02 4.09 100.67
SCNpilot_expt_500_p_scaffold_54240
Species: Achromobacter xylosoxidans (100%)
2 1049 bp 66.06 2.62 100.67
SCNpilot_expt_500_p_scaffold_25240
Species: Bordetella petrii (100%)
6 3061 bp 66.38 4.25 100.65
SCNpilot_expt_500_p_scaffold_23891
Species: Xanthomonas sacchari (66.67%)
3 2188 bp 68.60 2.97 100.64
SCNpilot_expt_500_p_scaffold_23633
Phylum: Proteobacteria (66.67%)
3 2210 bp 69.50 5.66 100.59
SCNpilot_expt_500_p_scaffold_39957
Species: Massilia sp. LC238 (50%)
2 1366 bp 70.28 3.66 100.59
SCNpilot_expt_500_p_scaffold_37984
Species: Achromobacter piechaudii (50%)
2 1432 bp 68.99 4.02 100.56
SCNpilot_expt_500_p_scaffold_43928
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1256 bp 67.60 4.78 100.56
SCNpilot_expt_500_p_scaffold_46753
Species: RBG_16_Betaproteobacteria_66_20_curated (50%)
2 1191 bp 68.68 2.94 100.50
SCNpilot_expt_500_p_scaffold_45947
Species: Cupriavidus sp. HPC(L) (100%)
2 1209 bp 66.58 4.55 100.50
SCNpilot_expt_500_p_scaffold_45807
Species: R_Betaproteobacteria_64_12 (66.67%)
3 1212 bp 67.66 3.71 100.50
SCNpilot_expt_500_p_scaffold_51808
Genus: Bordetella (66.67%)
3 1090 bp 71.10 2.75 100.46
SCNpilot_expt_500_p_scaffold_29982
Genus: Burkholderia (66.67%)
3 1780 bp 72.70 3.93 100.45
SCNpilot_expt_500_p_scaffold_50595
Species: Paracoccus sp. 39524 (50%)
2 1114 bp 69.12 3.14 100.45
SCNpilot_expt_500_p_scaffold_26260
Species: Cupriavidus necator (50%)
2 2007 bp 70.70 2.74 100.45
SCNpilot_expt_500_p_scaffold_34277
Class: Alphaproteobacteria (66.67%)
3 1574 bp 70.08 2.22 100.45
SCNpilot_expt_500_p_scaffold_33076
Species: Burkholderia graminis (50%)
2 1628 bp 68.37 3.69 100.43
SCNpilot_expt_500_p_scaffold_27846
Class: Betaproteobacteria (66.67%)
3 1903 bp 69.52 6.57 100.42
SCNpilot_expt_500_p_scaffold_22517
Species: Pseudomonas fluorescens (50%)
4 2310 bp 69.61 5.30 100.39
SCNpilot_expt_500_p_scaffold_27555
Species: Burkholderia cepacia (50%)
4 1922 bp 67.01 4.16 100.36
SCNpilot_expt_500_p_scaffold_48207
Species: Brevundimonas nasdae (100%)
2 1160 bp 64.14 6.03 100.35
SCNpilot_expt_500_p_scaffold_46095
Species: Achromobacter arsenitoxydans (50%)
2 1205 bp 70.71 3.73 100.33
SCNpilot_expt_500_p_scaffold_46098
Species: Achromobacter xylosoxidans (100%)
2 1205 bp 70.54 2.07 100.33
SCNpilot_expt_500_p_scaffold_44927
Species: Castellaniella defragrans (50%)
2 1232 bp 69.72 4.87 100.33
SCNpilot_expt_500_p_scaffold_28521
Species: Comamonas testosteroni (100%)
3 1863 bp 67.42 5.10 100.32
SCNpilot_expt_500_p_scaffold_44163
Species: Hylemonella gracilis (50%)
2 1250 bp 68.72 6.80 100.32
Displaying items 1-50 of 1490 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.