ggKbase | organisms

Consensus taxonomy: Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 3.35 Longest contig: 4.56 Kbp Bin length: 723.23 Kbp GC content: 70.56 %

Contigs count: 532 Features count: 988 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 3 / 55 BSCG 2 / 51 MC: 1 ASCG 1 / 38

Displaying items 101-150 of 532 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_p_scaffold_44938 Species: Singulisphaera acidiphila (50%)	2	1232 bp	70.78	4.46	91.80
SCNpilot_expt_500_p_scaffold_47099 Species: Planctopirus limnophila (50%)	2	1183 bp	72.78	4.65	98.39
SCNpilot_expt_500_p_scaffold_42915 Species: Singulisphaera acidiphila (100%)	2	1283 bp	69.37	2.34	91.43
SCNpilot_expt_500_p_scaffold_39310 Species: Singulisphaera acidiphila (50%)	2	1386 bp	70.56	3.25	87.88
SCNpilot_expt_500_p_scaffold_35792	2	1512 bp	68.52	3.31	96.63
SCNpilot_expt_500_p_scaffold_31936 Species: Singulisphaera acidiphila (100%)	2	1680 bp	67.74	5.21	75.00
SCNpilot_expt_500_p_scaffold_57225 Species: Singulisphaera acidiphila (100%)	2	1002 bp	66.17	1.50	68.86
SCNpilot_expt_500_p_scaffold_79868 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	1213 bp	74.28	6.60	44.27
SCNpilot_expt_500_p_scaffold_31173 Species: uncultured microorganism (50%)	2	1719 bp	70.97	4.51	99.83
SCNpilot_expt_500_p_scaffold_56206 Species: Singulisphaera acidiphila (50%)	2	1018 bp	67.39	2.21	66.31
SCNpilot_expt_500_p_scaffold_32096 Species: Isosphaera pallida (50%)	2	1673 bp	70.29	3.29	78.54
SCNpilot_expt_500_p_scaffold_48599 Species: Candidatus Accumulibacter sp. SK-02 (50%)	2	1152 bp	70.14	2.17	66.15
SCNpilot_expt_500_p_scaffold_56463 Species: Singulisphaera acidiphila (100%)	2	1014 bp	69.43	3.45	78.70
SCNpilot_expt_500_p_scaffold_25481 Species: Methylobacterium oryzae (50%)	2	2065 bp	71.72	4.60	96.03
SCNpilot_expt_500_p_scaffold_47880 Species: Singulisphaera acidiphila (50%)	2	1167 bp	72.07	2.78	84.06
SCNpilot_expt_500_p_scaffold_46833 Species: Singulisphaera acidiphila (100%)	2	1189 bp	72.75	5.47	101.68
SCNpilot_expt_500_p_scaffold_47882 Species: Geitlerinema sp. PCC 7407 (50%)	2	1167 bp	71.72	1.71	98.97
SCNpilot_expt_500_p_scaffold_42162 Species: Singulisphaera acidiphila (50%)	2	1846 bp	70.53	3.25	68.91
SCNpilot_expt_500_p_scaffold_54051	2	1052 bp	73.95	2.38	70.15
SCNpilot_expt_500_p_scaffold_51276 Species: Singulisphaera acidiphila (100%)	2	1101 bp	70.66	4.54	90.46
SCNpilot_expt_500_p_scaffold_32870 Species: Candidatus Solibacter usitatus (50%)	2	1637 bp	71.96	4.58	69.27
SCNpilot_expt_500_p_scaffold_39584 Species: Aquamicrobium defluvii (50%)	2	1378 bp	71.55	2.54	74.24
SCNpilot_expt_500_p_scaffold_31184 Species: Singulisphaera acidiphila (50%)	2	1718 bp	71.54	2.33	92.72
SCNpilot_expt_500_p_scaffold_37081 Species: Singulisphaera acidiphila (50%)	2	1464 bp	67.14	1.71	63.32
SCNpilot_expt_500_p_scaffold_32619 Species: Singulisphaera acidiphila (50%)	2	1648 bp	74.76	5.16	95.02
SCNpilot_expt_500_p_scaffold_51541 Species: Singulisphaera acidiphila (50%)	2	1096 bp	65.97	3.19	92.24
SCNpilot_expt_500_p_scaffold_32623 Species: RBG_16_Planctomycetes_55_9_curated (50%)	2	1648 bp	73.85	1.82	89.93
SCNpilot_expt_500_p_scaffold_52599	2	1076 bp	67.01	1.39	59.94
SCNpilot_expt_500_p_scaffold_52344 Species: Methylobacterium extorquens (50%)	2	1081 bp	74.84	1.85	98.24
SCNpilot_expt_500_p_scaffold_33405 Species: Singulisphaera acidiphila (100%)	2	1612 bp	71.96	2.95	85.05
SCNpilot_expt_500_p_scaffold_50306 Species: Gimesia maris (50%)	2	1119 bp	71.22	3.13	99.46
SCNpilot_expt_500_p_scaffold_54331 Species: Singulisphaera acidiphila (50%)	2	1048 bp	67.75	1.91	60.69
SCNpilot_expt_500_p_scaffold_34229 Species: R_Acidobacteria_61_28 (50%)	2	1576 bp	68.46	2.38	90.99
SCNpilot_expt_500_p_scaffold_35062 Species: Singulisphaera acidiphila (100%)	2	1541 bp	70.47	3.57	89.16
SCNpilot_expt_500_p_scaffold_51045 Species: Pedosphaera parvula (50%)	2	1105 bp	73.94	1.81	100.72
SCNpilot_expt_500_p_scaffold_40534 Species: Singulisphaera acidiphila (100%)	2	1349 bp	71.16	2.97	97.18
SCNpilot_expt_500_p_scaffold_39354 Species: Singulisphaera acidiphila (100%)	2	1385 bp	72.64	4.69	95.96
SCNpilot_expt_500_p_scaffold_57266 Species: Singulisphaera acidiphila (100%)	2	1002 bp	71.06	3.49	89.82
SCNpilot_expt_500_p_scaffold_39357 Species: Singulisphaera acidiphila (100%)	2	1385 bp	72.92	2.53	96.61
SCNpilot_expt_500_p_scaffold_54599 Species: Acidithiobacillus ferrivorans (50%)	2	1043 bp	62.42	1.92	35.67
SCNpilot_expt_500_p_scaffold_25779 Species: Singulisphaera acidiphila (50%)	2	2045 bp	72.86	3.18	67.48
SCNpilot_expt_500_p_scaffold_43339 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1272 bp	63.44	4.32	52.83
SCNpilot_expt_500_p_scaffold_47155 Species: Singulisphaera acidiphila (50%)	2	1182 bp	74.96	2.96	101.02
SCNpilot_expt_500_p_scaffold_52116 Species: marine sediment metagenome (50%)	2	1085 bp	72.17	5.53	94.56
SCNpilot_expt_500_p_scaffold_41782 Species: RifOxyA12_full_Lentisphaerae_48_11_curated (50%)	2	1313 bp	73.34	3.05	97.79
SCNpilot_expt_500_p_scaffold_54094	2	1052 bp	71.58	1.00	69.58
SCNpilot_expt_500_p_scaffold_53166 Species: Singulisphaera acidiphila (50%)	2	1067 bp	71.70	1.87	96.16
SCNpilot_expt_500_p_scaffold_46623 Species: Singulisphaera acidiphila (50%)	2	1194 bp	73.95	3.35	82.66
SCNpilot_expt_500_p_scaffold_41528 Species: RLO_PLX_64_10 (50%)	2	1320 bp	73.18	3.41	99.77
SCNpilot_expt_500_p_scaffold_53169 Species: Gimesia maris (50%)	2	1067 bp	73.29	1.87	99.25

Displaying items 101-150 of 532 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Planctomycetales_70_10) and add all its contigs / scaffolds to the organism you choose below

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SCNpilot_P_inoc_Planctomycetales_70_10

SCNPILOT_EXPT_500_P_Planctomycetales_71_3

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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