ggKbase home page

SCNpilot_expt_500_p_scaffold_38658_2

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

partial RP 13 / 55 BSCG 13 / 51 MC: 1 ASCG 4 / 38 MC: 1
Location: comp(351..1061)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor; K02405 RNA polymerase sigma factor for flagellar operon FliA id=12497621 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 237.0
  • Bit_score: 465
  • Evalue 3.30e-128
  • rbh
RNA polymerase sigma-70 factor; K02405 RNA polymerase sigma factor for flagellar operon FliA similarity KEGG
DB: KEGG
  • Identity: 94.9
  • Coverage: 236.0
  • Bit_score: 445
  • Evalue 8.50e-123
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.9
  • Coverage: 236.0
  • Bit_score: 445
  • Evalue 3.80e-122

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGGCTGGAAAAAAATCGTCGCAAGACGAGCAAATCACCAAATACGCGCCACTGGTCAAACGCATCGCCTATCACATGATGGCGCGCCTGCCGGCCAGTGTCGAAGTCGATGATCTGATCCAGGTCGGTCTCATTGGTCTGATGGACGCGGTCGCACGGTTCGACGGCAGCCAGGGTGCGCAATTCGAGTCTTATGCCACGCAGCGCATCCGCGGCGCGATGCTCGATGAACTGCGCGAGGCCGACTGGCTGCCCCGTCACGTGCGCCAGAAATCCCGACAGATCGAAACGGCCATCCACAAGCTCGAACAGCGCAACGGGCGCGCGCCGAGCGAGCAGGAAATCTCCGCCGAGCTCGGTCTGGCGCTCGACCAGTACCAATCCATGCTGGGCGACGTGAAATGTTCGCAGTTGCTGTATTACGAGGATTTCTCGGATGAGGACAGCGCGAGCTTTCTCGAACGCTACCTGGTCGACGGCAGCAATGATCCGCTTGCGGTACTGGAGGACGAGGGATTCCGCGACAGCCTGATCGCAGCGATTCATCATCTGCCGGAACGCGAACGCAGCATGATGGGCATGTACTACGAACAGGACATGAACCTGAAGGAAATCGGTGCCGTGCTCGGGGTGTCCGAGTCGCGCGTCTGCCAACTGCACTCGCAGGCGGTGGCCCGCCTGCGCGCGCAGCTCAAGATATGGAAGGACTGA
PROTEIN sequence
Length: 237
MAGKKSSQDEQITKYAPLVKRIAYHMMARLPASVEVDDLIQVGLIGLMDAVARFDGSQGAQFESYATQRIRGAMLDELREADWLPRHVRQKSRQIETAIHKLEQRNGRAPSEQEISAELGLALDQYQSMLGDVKCSQLLYYEDFSDEDSASFLERYLVDGSNDPLAVLEDEGFRDSLIAAIHHLPERERSMMGMYYEQDMNLKEIGAVLGVSESRVCQLHSQAVARLRAQLKIWKD*