ggKbase | organisms

Consensus taxonomy: Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 4.58 Longest contig: 4.49 Kbp Bin length: 537.69 Kbp GC content: 64.34 %

Contigs count: 391 Features count: 846 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 13 / 51 MC: 1 ASCG 4 / 38 MC: 1

Displaying items 151-200 of 391 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_p_scaffold_55679 Species: Methylibium sp. T29-B (50%)	2	1026 bp	68.32	2.44	80.12
SCNpilot_expt_500_p_scaffold_44471 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1243 bp	63.15	3.22	92.92
SCNpilot_expt_500_p_scaffold_42193 Species: Thiobacillus denitrificans (100%)	2	1302 bp	62.44	3.26	92.63
SCNpilot_expt_500_p_scaffold_44986 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1231 bp	64.18	4.26	98.94
SCNpilot_expt_500_p_scaffold_47918 Species: Thiobacillus denitrificans (50%)	2	1166 bp	65.09	2.57	96.48
SCNpilot_expt_500_p_scaffold_52622 Species: BJP_08E140C01_Dechloromonas_61_78 (50%)	2	1076 bp	68.22	4.18	97.86
SCNpilot_expt_500_p_scaffold_31728 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1690 bp	67.63	2.51	100.12
SCNpilot_expt_500_p_scaffold_57015 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1006 bp	70.68	1.49	100.20
SCNpilot_expt_500_p_scaffold_38505 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1413 bp	65.75	3.89	98.30
SCNpilot_expt_500_p_scaffold_51312 Species: Sulfuricella sp. T08 (50%)	2	1100 bp	62.91	5.00	103.09
SCNpilot_expt_500_p_scaffold_49040 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1143 bp	56.61	3.50	61.42
SCNpilot_expt_500_p_scaffold_44225 Species: Thiobacillus denitrificans (100%)	2	1249 bp	65.33	2.80	93.19
SCNpilot_expt_500_p_scaffold_35843 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1510 bp	61.72	7.45	61.99
SCNpilot_expt_500_p_scaffold_42970 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1281 bp	68.70	3.12	100.70
SCNpilot_expt_500_p_scaffold_49043 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1143 bp	66.32	3.06	98.16
SCNpilot_expt_500_p_scaffold_37629 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1445 bp	52.39	1.00	55.22
SCNpilot_expt_500_p_scaffold_44996 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)	2	1230 bp	61.14	3.25	89.76
SCNpilot_expt_500_p_scaffold_53165 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1067 bp	62.14	1.87	80.69
SCNpilot_expt_500_p_scaffold_54350 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1047 bp	66.09	5.25	83.38
SCNpilot_expt_500_p_scaffold_52374 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1080 bp	69.63	1.00	95.83
SCNpilot_expt_500_p_scaffold_56511 Species: Aromatoleum aromaticum (50%)	2	1013 bp	63.97	1.48	79.37
SCNpilot_expt_500_p_scaffold_33688 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1600 bp	59.62	3.13	92.81
SCNpilot_expt_500_p_scaffold_51064 Species: Hyphomicrobium denitrificans (50%)	2	1105 bp	72.40	3.85	100.18
SCNpilot_expt_500_p_scaffold_47928 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1166 bp	61.66	3.00	83.62
SCNpilot_expt_500_p_scaffold_49816 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1128 bp	58.87	2.22	94.15
SCNpilot_expt_500_p_scaffold_49050 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1143 bp	64.92	2.41	91.86
SCNpilot_expt_500_p_scaffold_36093 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1501 bp	69.42	3.33	95.74
SCNpilot_expt_500_p_scaffold_56260 Species: Thiobacillus denitrificans (50%)	2	1017 bp	68.04	3.44	97.35
SCNpilot_expt_500_p_scaffold_50591 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1114 bp	71.81	1.80	99.10
SCNpilot_expt_500_p_scaffold_35857 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1510 bp	64.90	4.14	102.32
SCNpilot_expt_500_p_scaffold_33953 Species: Thiobacillus denitrificans (50%)	2	1588 bp	62.28	5.04	99.75
SCNpilot_expt_500_p_scaffold_44241 Species: Thioflavicoccus mobilis (100%)	2	1248 bp	54.25	1.20	97.84
SCNpilot_expt_500_p_scaffold_41027 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1334 bp	67.24	2.62	82.98
SCNpilot_expt_500_p_scaffold_54110 Species: Vibrio sp. ER1A (50%)	2	1051 bp	54.23	3.81	66.22
SCNpilot_expt_500_p_scaffold_48919 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1145 bp	65.59	3.06	82.53
SCNpilot_expt_500_p_scaffold_26346 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	2003 bp	67.45	3.25	95.26
SCNpilot_expt_500_p_scaffold_40571 Species: Methylobacillus flagellatus (50%)	2	1348 bp	69.36	3.71	97.26
SCNpilot_expt_500_p_scaffold_24885 Species: Nitrobacter hamburgensis (50%)	2	2108 bp	64.47	3.80	99.76
SCNpilot_expt_500_p_scaffold_35357 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1529 bp	70.50	2.62	83.58
SCNpilot_expt_500_p_scaffold_41292 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1327 bp	67.90	3.01	99.25
SCNpilot_expt_500_p_scaffold_53957 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1054 bp	60.82	1.90	87.95
SCNpilot_expt_500_p_scaffold_51342 Species: Thiobacillus denitrificans (100%)	2	1100 bp	66.36	7.05	93.27
SCNpilot_expt_500_p_scaffold_54374 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1047 bp	69.15	1.00	95.70
SCNpilot_expt_500_p_scaffold_46138 Species: Nitrosomonas sp. AL212 (50%)	2	1204 bp	55.23	2.49	58.55
SCNpilot_expt_500_p_scaffold_56283 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1017 bp	65.39	2.70	97.35
SCNpilot_expt_500_p_scaffold_51349 Species: Acidithiobacillus sp. GGI-221 (50%)	2	1100 bp	58.36	4.77	82.64
SCNpilot_expt_500_p_scaffold_39656 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1376 bp	70.06	2.91	100.95
SCNpilot_expt_500_p_scaffold_38806 Species: Mycobacterium rhodesiae (50%)	2	1402 bp	67.69	2.85	99.93
SCNpilot_expt_500_p_scaffold_34799 Species: Thiobacillus denitrificans (50%)	2	1551 bp	70.47	1.93	99.42
SCNpilot_expt_500_p_scaffold_34032 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1584 bp	65.97	4.73	98.67

Displaying items 151-200 of 391 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

SCNPILOT_EXPT_500_P_Hydrogenophilales_64_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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