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SCNpilot_P_inoc_Burkholderiales_68_20

SCNPILOT_EXPT_500_P_Burkholderiales_67_3
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 3.41 Longest contig: 3.61 Kbp Bin length: 520.13 Kbp GC content: 67.03 %
Contigs count: 388 Features count: 788 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 2 / 55 BSCG 5 / 51 ASCG 3 / 38
Displaying items 201-250 of 388 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_34321
Species: Acidovorax ebreus (50%)
2 1572 bp 58.59 1.00 79.01
SCNpilot_expt_500_p_scaffold_45728
Species: Acidovorax sp. MR-S7 (50%)
2 1796 bp 73.05 1.39 89.70
SCNpilot_expt_500_p_scaffold_53752
Species: Comamonas testosteroni (50%)
2 1057 bp 62.44 2.60 91.39
SCNpilot_expt_500_p_scaffold_27540
Species: Methylomicrobium album (50%)
2 1923 bp 68.90 1.30 97.82
SCNpilot_expt_500_p_scaffold_34069
Species: R_Burkholderiales_64_960 (50%)
2 1583 bp 70.50 2.84 78.08
SCNpilot_expt_500_p_scaffold_38334
Species: Alicycliphilus sp. B1 (50%)
2 1419 bp 69.63 4.58 97.89
SCNpilot_expt_500_p_scaffold_44565
Species: Acidovorax sp. NO-1 (50%)
2 1241 bp 68.25 3.02 86.30
SCNpilot_expt_500_p_scaffold_49126
Species: Acidovorax sp. JS42 (50%)
2 1141 bp 65.73 3.29 102.02
SCNpilot_expt_500_p_scaffold_53758
Species: R_Burkholderiales_64_960 (100%)
2 1057 bp 69.54 1.00 98.20
SCNpilot_expt_500_p_scaffold_44055
Species: Cupriavidus sp. SK-4 (50%)
2 1253 bp 67.92 2.00 78.05
SCNpilot_expt_500_p_scaffold_55009
Species: Alicycliphilus sp. B1 (50%)
2 1036 bp 68.73 3.38 89.77
SCNpilot_expt_500_p_scaffold_54690
Species: Advenella kashmirensis (100%)
2 1042 bp 76.58 3.84 99.90
SCNpilot_expt_500_p_scaffold_51403
Species: Acidovorax sp. JS42 (100%)
2 1098 bp 71.40 3.19 86.89
SCNpilot_expt_500_p_scaffold_55011
Species: Alicycliphilus sp. B1 (100%)
2 1036 bp 64.86 6.76 61.68
SCNpilot_expt_500_p_scaffold_51404
Species: Acidovorax ebreus (50%)
2 1098 bp 67.76 4.10 94.81
SCNpilot_expt_500_p_scaffold_54180
Species: BJP_08E140C01_Burkholderiales_65_30 (50%)
2 1050 bp 70.29 1.90 98.29
SCNpilot_expt_500_p_scaffold_32743
Species: Acidovorax sp. MR-S7 (50%)
2 1643 bp 71.58 2.28 99.51
SCNpilot_expt_500_p_scaffold_38088
Species: Alicycliphilus sp. B1 (100%)
2 1428 bp 70.52 1.75 85.92
SCNpilot_expt_500_p_scaffold_54695
Species: RLO_Burkholderiales_61_40 (100%)
2 1042 bp 71.69 4.56 100.19
SCNpilot_expt_500_p_scaffold_47505
Species: Comamonas testosteroni (50%)
2 1174 bp 71.04 4.26 91.48
SCNpilot_expt_500_p_scaffold_41106
Species: RLO_Burkholderiales_65_40 (50%)
2 1332 bp 70.57 4.13 87.16
SCNpilot_expt_500_p_scaffold_38094
Species: Afipia broomeae (50%)
2 1428 bp 70.52 5.60 98.95
SCNpilot_expt_500_p_scaffold_42301 2 1299 bp 47.58 3.46 96.77
SCNpilot_expt_500_p_scaffold_47256
Species: Ralstonia sp. 5_2_56FAA (50%)
2 1180 bp 70.59 2.97 92.29
SCNpilot_expt_500_p_scaffold_39466
Species: Afipia broomeae (50%)
2 1382 bp 72.58 5.43 99.86
SCNpilot_expt_500_p_scaffold_50938
Species: R_Burkholderiales_64_960 (50%)
2 1107 bp 66.85 3.84 83.20
SCNpilot_expt_500_p_scaffold_45500
Species: Acidovorax sp. CF316 (50%)
2 1219 bp 71.21 1.64 100.16
SCNpilot_expt_500_p_scaffold_30126
Species: Acidovorax sp. NO-1 (50%)
2 1773 bp 70.78 4.94 97.29
SCNpilot_expt_500_p_scaffold_47261
Species: Snodgrassella alvi (50%)
2 1180 bp 70.17 3.39 81.10
SCNpilot_expt_500_p_scaffold_57382
Species: RLO_Burkholderiales_65_40 (50%)
2 1000 bp 72.20 6.00 98.70
SCNpilot_expt_500_p_scaffold_45246
Species: Acidovorax ebreus (50%)
2 1224 bp 73.69 3.27 93.63
SCNpilot_expt_500_p_scaffold_56871
Species: Pseudomonas fluorescens (50%)
2 1008 bp 55.26 2.48 99.11
SCNpilot_expt_500_p_scaffold_40914
Species: Acidovorax delafieldii (50%)
2 1337 bp 72.18 2.80 98.73
SCNpilot_expt_500_p_scaffold_52483
Species: Acidovorax delafieldii (50%)
2 1078 bp 51.95 1.86 82.65
SCNpilot_expt_500_p_scaffold_54716
Species: Snodgrassella alvi (50%)
2 1041 bp 59.08 3.36 98.85
SCNpilot_expt_500_p_scaffold_37486
Species: Comamonas testosteroni (50%)
2 1450 bp 72.69 2.07 90.41
SCNpilot_expt_500_p_scaffold_41125
Species: RLO_Burkholderiales_64_33 (50%)
2 1331 bp 72.95 3.19 92.19
SCNpilot_expt_500_p_scaffold_40664
Species: Acidovorax avenae (50%)
2 1346 bp 70.65 4.64 94.73
SCNpilot_expt_500_p_scaffold_44345
Species: Alicycliphilus denitrificans (100%)
2 1246 bp 63.08 4.21 99.68
SCNpilot_expt_500_p_scaffold_40154
Species: Acidovorax delafieldii (50%)
2 1360 bp 69.04 4.04 98.38
SCNpilot_expt_500_p_scaffold_50448
Species: Acidovorax sp. MR-S7 (50%)
2 1116 bp 64.78 4.48 86.83
SCNpilot_expt_500_p_scaffold_44353
Species: Cellvibrio japonicus (50%)
2 1246 bp 55.54 2.81 92.94
SCNpilot_expt_500_p_scaffold_44610
Species: Alkalilimnicola ehrlichii (100%)
2 1240 bp 49.35 4.03 100.16
SCNpilot_expt_500_p_scaffold_49683
Species: Acidovorax sp. NO-1 (50%)
2 1131 bp 56.15 6.41 50.93
SCNpilot_expt_500_p_scaffold_56636
Species: Alicycliphilus denitrificans (50%)
2 1011 bp 73.69 1.98 101.48
SCNpilot_expt_500_p_scaffold_36982
Species: Thauera sp. SWB20 (50%)
2 1468 bp 64.78 4.77 92.37
SCNpilot_expt_500_p_scaffold_53549
Species: Comamonas testosteroni (50%)
2 1061 bp 64.56 4.95 100.09
SCNpilot_expt_500_p_scaffold_55822
Species: GWA2_Burkholderiales_64_37_curated (50%)
2 1024 bp 67.38 2.44 87.01
SCNpilot_expt_500_p_scaffold_23610
Species: RLO_Burkholderiales_65_40 (50%)
2 2212 bp 71.20 2.49 98.06
SCNpilot_expt_500_p_scaffold_38386
Species: Alicycliphilus sp. B1 (50%)
2 1418 bp 69.25 3.17 80.61
Displaying items 201-250 of 388 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.