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SCNPILOT_EXPT_750_P_Eukaryotic_virus_38_17

SCNPILOT_EXPT_500_P_unknown_37_2
In projects: SCNPILOT_EXPT_500_P  |  phage-plasmid-virus-protein-families

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 2.47 Longest contig: 3.08 Kbp Bin length: 66.80 Kbp GC content: 36.70 %
Contigs count: 50 Features count: 112 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 0 / 55 BSCG 1 / 51 ASCG 1 / 38
Displaying 50 items
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_30607 5 1748 bp 36.27 1.43 98.51
SCNpilot_expt_500_p_scaffold_46813 4 1189 bp 34.57 3.78 92.60
SCNpilot_expt_500_p_scaffold_31257 4 1714 bp 40.02 4.08 93.29
SCNpilot_expt_500_p_scaffold_37745 4 1440 bp 35.90 2.26 89.58
SCNpilot_expt_500_p_scaffold_43533 3 1266 bp 38.31 1.00 98.34
SCNpilot_expt_500_p_scaffold_83795 3 1274 bp 34.69 4.71 84.77
SCNpilot_expt_500_p_scaffold_29526
Domain: Viruses (66.67%)
3 1805 bp 34.79 3.05 95.73
SCNpilot_expt_500_p_scaffold_34510 3 1564 bp 35.81 1.00 77.49
SCNpilot_expt_500_p_scaffold_53187 3 1067 bp 36.83 1.41 78.16
SCNpilot_expt_500_p_scaffold_30850 3 1736 bp 38.31 2.59 99.71
SCNpilot_expt_500_p_scaffold_53226 3 1066 bp 33.11 1.41 101.03
SCNpilot_expt_500_p_scaffold_46993 3 1186 bp 52.45 2.53 92.58
SCNpilot_expt_500_p_scaffold_42069 3 1305 bp 35.10 2.30 99.54
SCNpilot_expt_500_p_scaffold_16058 3 3077 bp 36.72 3.41 88.63
SCNpilot_expt_500_p_scaffold_46538 3 1196 bp 41.14 1.00 98.33
SCNpilot_expt_500_p_scaffold_33874 3 1591 bp 35.32 2.51 93.15
SCNpilot_expt_500_p_scaffold_36279
Species: Organic Lake phycodnavirus 2 (50%)
2 1493 bp 37.04 2.34 92.03
SCNpilot_expt_500_p_scaffold_33642 2 1602 bp 40.07 1.56 100.00
SCNpilot_expt_500_p_scaffold_38238
Species: Organic Lake phycodnavirus 2 (50%)
2 1423 bp 33.10 2.11 94.03
SCNpilot_expt_500_p_scaffold_52357 2 1081 bp 38.02 1.00 98.80
SCNpilot_expt_500_p_scaffold_54341
Species: RBG_13_Spirochaetes_51_14_curated (50%)
2 1048 bp 36.16 1.00 64.69
SCNpilot_expt_500_p_scaffold_57030
Species: Organic Lake phycodnavirus 1 (50%)
2 1005 bp 35.72 1.00 97.31
SCNpilot_expt_500_p_scaffold_40831
Species: Nematocida parisii (50%)
2 1340 bp 36.19 4.48 71.64
SCNpilot_expt_500_p_scaffold_45682
Species: Monosiga brevicollis (50%)
2 1214 bp 36.16 4.53 92.42
SCNpilot_expt_500_p_scaffold_47214 2 1181 bp 34.97 2.96 98.81
SCNpilot_expt_500_p_scaffold_38058 2 1429 bp 37.30 2.45 69.91
SCNpilot_expt_500_p_scaffold_40626
Species: Chondrus crispus (50%)
2 1347 bp 38.23 1.11 93.32
SCNpilot_expt_500_p_scaffold_34841 2 1550 bp 31.23 2.26 90.39
SCNpilot_expt_500_p_scaffold_33001 2 1631 bp 37.71 1.84 76.89
SCNpilot_expt_500_p_scaffold_57380
Species: Shigella boydii (50%)
2 1000 bp 37.60 2.00 84.60
SCNpilot_expt_500_p_scaffold_56101
Species: Organic Lake phycodnavirus 2 (50%)
2 1020 bp 33.33 1.96 93.53
SCNpilot_expt_500_p_scaffold_46476
Species: marine sediment metagenome (50%)
2 1197 bp 39.18 2.92 88.72
SCNpilot_expt_500_p_scaffold_45534
Species: Metarhizium robertsii (50%)
2 1218 bp 36.45 2.87 95.32
SCNpilot_expt_500_p_scaffold_57180
Species: Penicillium italicum (50%)
2 1003 bp 40.08 2.99 89.73
SCNpilot_expt_500_p_scaffold_41187 2 1330 bp 37.44 3.01 97.44
SCNpilot_expt_500_p_scaffold_50501
Species: Naegleria gruberi (50%)
2 1115 bp 38.12 3.59 103.05
SCNpilot_expt_500_p_scaffold_53344
Species: Salmonella bongori (50%)
2 1064 bp 35.43 4.70 83.46
SCNpilot_expt_500_p_scaffold_42386 2 1296 bp 38.50 1.00 100.93
SCNpilot_expt_500_p_scaffold_44671
Species: Megavirus courdo7 (50%)
2 1238 bp 31.26 3.63 100.32
SCNpilot_expt_500_p_scaffold_52815 2 1073 bp 37.19 2.33 97.30
SCNpilot_expt_500_p_scaffold_55880 2 1023 bp 32.94 1.47 75.37
SCNpilot_expt_500_p_scaffold_36566
Species: Ectocarpus siliculosus (100%)
1 1482 bp 39.68 2.87 52.63
SCNpilot_expt_500_p_scaffold_50816
Species: Aphanomyces invadans (100%)
1 1110 bp 34.41 3.15 99.73
SCNpilot_expt_500_p_scaffold_40063
Species: Cafeteria roenbergensis virus (100%)
1 1363 bp 35.44 1.83 99.71
SCNpilot_expt_500_p_scaffold_39179 1 1391 bp 33.93 1.44 79.37
SCNpilot_expt_500_p_scaffold_47741
Species: Chlorella variabilis (100%)
1 1170 bp 43.59 1.28 99.74
SCNpilot_expt_500_p_scaffold_34074
Species: Ichthyophthirius multifiliis (100%)
1 1582 bp 38.12 2.37 81.16
SCNpilot_expt_500_p_scaffold_43963 1 1255 bp 30.28 1.00 99.68
SCNpilot_expt_500_p_scaffold_46491 1 1197 bp 35.51 5.85 39.10
SCNpilot_expt_500_p_scaffold_51216
Species: Methanotorris igneus (100%)
1 1102 bp 34.48 2.72 99.91
Displaying 50 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.