ggKbase home page

scnpilot_expt_750_bf_scaffold_8689_3

Organism: SCNpilot_expt_750_bf_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17
Location: comp(1147..1725)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR38_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 192.0
  • Bit_score: 306
  • Evalue 1.60e-80
  • rbh
RNA polymerase sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 82.8
  • Coverage: 192.0
  • Bit_score: 307
  • Evalue 2.00e-81
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.8
  • Coverage: 192.0
  • Bit_score: 307
  • Evalue 1.00e-80

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
GTGACGATATTGTCCGATCGCGAGTTGCTATCGCGGGAAGCGATCAACCAACTGGTTTTGGCGATCGCAACAAGACAGGATCGTCAGGCTTTCGCCGAGCTGTTCAATTTTGCAGCGCCCAGGATCAAGGCGTTCATGATGCGCTCGGGGTCCCCGCCTGAAGTGGCGGAAGAAATAGCCCAGGAAGCGATGCTCCTGGTCTGGCGCAAGGCCTCCTATTTCGATCCCGCACGCGCAGGCGCGATGACATGGATCTTTACGATCGCACGGAATTTGCGCATCGACTTCCAGCGGAAGGCCCAAACGCTCAAGCAGGCTTCCGGGAGCGAGCCGGACGAATATCAGCCATCGGAACCGACGCCGGAGGAGATCCTCGTCGTCAGGGCGGATGAAGATAGGGTCCGGGCCGCGCTGCAGGCGCTCAGTTCGGAACAAGAGGAAATCATCAGATTGTCCTTTTTTCGTGATCGTCCTCATTCCGAAATCGCCAAGGAACTGGATCTGCCGCTTGGGACAGTGAAATCACGTATCAGACGTGCGCTTGGCAGGTTGAGGGACATGCTGGAAGAAACACTATGA
PROTEIN sequence
Length: 193
VTILSDRELLSREAINQLVLAIATRQDRQAFAELFNFAAPRIKAFMMRSGSPPEVAEEIAQEAMLLVWRKASYFDPARAGAMTWIFTIARNLRIDFQRKAQTLKQASGSEPDEYQPSEPTPEEILVVRADEDRVRAALQALSSEQEEIIRLSFFRDRPHSEIAKELDLPLGTVKSRIRRALGRLRDMLEETL*