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SCNPILOT_EXPT_750_BF_Thiobacillus_SCN1_63_400_partial

SCNPILOT_EXPT_750_BF_Hydrogenophilales_62_403
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 403.10 Longest contig: 171.87 Kbp Bin length: 3.33 Mbp GC content: 61.66 %
Contigs count: 263 Features count: 3670 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 40 / 55 MC: 2 BSCG 41 / 51 MC: 3 ASCG 10 / 38
Displaying items 101-150 of 263 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_3184
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
12 9067 bp 61.85 380.67 81.46
scnpilot_expt_750_bf_scaffold_3279
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (63.64%)
11 11367 bp 62.21 377.89 92.53
scnpilot_expt_750_bf_scaffold_6675
Genus: Burkholderia (81.82%)
11 10769 bp 59.37 544.71 94.74
scnpilot_expt_750_bf_scaffold_1825
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (63.64%)
11 8909 bp 63.26 428.47 84.76
scnpilot_expt_750_bf_scaffold_1326
Class: Betaproteobacteria (63.64%)
11 17188 bp 54.21 351.38 88.84
scnpilot_expt_750_bf_scaffold_5427
Order: Hydrogenophilales (81.82%)
11 13786 bp 61.21 391.47 72.05
scnpilot_expt_750_bf_scaffold_1398
Order: Hydrogenophilales (72.73%)
11 11969 bp 64.05 406.78 87.85
scnpilot_expt_750_bf_scaffold_3668
Phylum: Proteobacteria (72.73%)
11 6840 bp 62.69 218.20 72.15
scnpilot_expt_750_bf_scaffold_2874 11 9126 bp 58.02 309.77 82.45
scnpilot_expt_750_bf_scaffold_6054
Order: Hydrogenophilales (72.73%)
11 9872 bp 63.01 383.10 92.41
scnpilot_expt_750_bf_scaffold_1448
Class: Betaproteobacteria (90.91%)
11 9558 bp 58.91 360.40 78.91
scnpilot_expt_750_bf_scaffold_7103
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
10 8618 bp 60.56 404.24 84.42
scnpilot_expt_750_bf_scaffold_3484
Order: Hydrogenophilales (50%)
10 9707 bp 60.84 422.94 88.18
scnpilot_expt_750_bf_scaffold_4942
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
10 7342 bp 59.60 387.43 78.70
scnpilot_expt_750_bf_scaffold_4178
Genus: Sulfuricella (50%)
10 8071 bp 62.52 447.65 84.00
scnpilot_expt_750_bf_scaffold_4700
Genus: Thiobacillus (50%)
10 7766 bp 60.92 382.44 86.72
scnpilot_expt_750_bf_scaffold_4957
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (70%)
10 9003 bp 63.48 388.54 66.71
scnpilot_expt_750_bf_scaffold_4725
Order: Hydrogenophilales (50%)
10 9608 bp 61.30 379.53 89.74
scnpilot_expt_750_bf_scaffold_2974
Phylum: Proteobacteria (50%)
10 9415 bp 53.45 359.37 74.66
scnpilot_expt_750_bf_scaffold_3308
Order: Hydrogenophilales (60%)
10 7011 bp 59.31 399.02 85.07
scnpilot_expt_750_bf_scaffold_1626
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (90%)
10 9888 bp 62.43 383.72 97.54
scnpilot_expt_750_bf_scaffold_14401
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
10 6741 bp 64.09 383.77 89.54
scnpilot_expt_750_bf_scaffold_1666
Species: GWE1_Thiobacillus_62_9_curated (50%)
10 9436 bp 63.61 394.05 94.36
scnpilot_expt_750_bf_scaffold_3165
Order: Hydrogenophilales (90%)
10 8388 bp 62.68 402.78 91.09
scnpilot_expt_750_bf_scaffold_1170
Phylum: Proteobacteria (60%)
10 14446 bp 57.64 360.39 91.53
scnpilot_expt_750_bf_scaffold_9843
Order: Hydrogenophilales (90%)
10 10707 bp 61.45 391.59 68.23
scnpilot_expt_750_bf_scaffold_2626
Class: Betaproteobacteria (70%)
10 10148 bp 60.46 568.34 85.29
scnpilot_expt_750_bf_scaffold_7095
Order: Hydrogenophilales (55.56%)
9 7181 bp 61.13 373.73 78.75
scnpilot_expt_750_bf_scaffold_4416
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (77.78%)
9 7997 bp 61.54 387.02 80.21
scnpilot_expt_750_bf_scaffold_7866
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (55.56%)
9 9542 bp 62.75 393.29 87.91
scnpilot_expt_750_bf_scaffold_7886
Species: GWE1_Thiobacillus_62_9_curated (55.56%)
9 7473 bp 59.90 420.01 71.22
scnpilot_expt_750_bf_scaffold_1243
Order: Hydrogenophilales (100%)
9 14654 bp 63.84 417.48 94.50
scnpilot_expt_750_bf_scaffold_3536
Order: Hydrogenophilales (77.78%)
9 7977 bp 61.46 393.79 86.16
scnpilot_expt_750_bf_scaffold_3538
Order: Hydrogenophilales (100%)
9 7142 bp 60.92 382.77 85.52
scnpilot_expt_750_bf_scaffold_1541
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (77.78%)
9 9541 bp 63.92 430.38 92.51
scnpilot_expt_750_bf_scaffold_1292
Phylum: Proteobacteria (77.78%)
9 10787 bp 56.86 250.46 96.78
scnpilot_expt_750_bf_scaffold_1575
Class: Gammaproteobacteria (66.67%)
9 8940 bp 64.07 229.73 93.32
scnpilot_expt_750_bf_scaffold_2301
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (55.56%)
9 6660 bp 62.31 414.00 95.50
scnpilot_expt_750_bf_scaffold_1926
Class: Betaproteobacteria (88.89%)
9 7647 bp 60.56 441.22 95.96
scnpilot_expt_750_bf_scaffold_15093
Class: Betaproteobacteria (55.56%)
9 6123 bp 57.46 375.96 76.78
scnpilot_expt_750_bf_scaffold_5782
Order: Hydrogenophilales (88.89%)
9 8427 bp 65.98 434.23 83.09
scnpilot_expt_750_bf_scaffold_1943
Order: Hydrogenophilales (88.89%)
9 9307 bp 58.94 368.70 88.19
scnpilot_expt_750_bf_scaffold_10138
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
9 6077 bp 63.35 413.98 95.57
scnpilot_expt_750_bf_scaffold_7085
Order: Hydrogenophilales (77.78%)
9 6513 bp 59.88 429.37 83.83
scnpilot_expt_750_bf_scaffold_8413
Order: Hydrogenophilales (100%)
8 8052 bp 60.67 375.84 88.41
scnpilot_expt_750_bf_scaffold_6342
Order: Hydrogenophilales (62.5%)
8 5272 bp 58.02 356.41 80.29
scnpilot_expt_750_bf_scaffold_5871
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (62.5%)
8 6682 bp 59.68 368.71 78.75
scnpilot_expt_750_bf_scaffold_5123
Order: Hydrogenophilales (75%)
8 6295 bp 60.00 427.28 83.02
scnpilot_expt_750_bf_scaffold_5401
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
8 4971 bp 57.41 346.61 80.27
scnpilot_expt_750_bf_scaffold_9742
Order: Hydrogenophilales (62.5%)
8 6376 bp 63.41 410.01 96.27
Displaying items 101-150 of 263 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.