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SCNPILOT_EXPT_750_BF_Rhizobiales_66_5_fragment

SCNPILOT_EXPT_750_BF_Devosia_66_5
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from ESOM

Displaying items 1-50 of 128 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_3496
Genus: Devosia (100%)
3 6596 bp 68.60 5.34 94.92
scnpilot_expt_750_bf_scaffold_5843
Genus: Mesorhizobium (50%)
4 5617 bp 65.44 5.12 95.07
scnpilot_expt_750_bf_scaffold_5894
Species: Devosia sp. DDB001 (50%)
4 5797 bp 65.78 5.39 92.53
scnpilot_expt_750_bf_scaffold_3586
Species: Devosia limi (100%)
4 6086 bp 66.66 5.22 95.24
scnpilot_expt_750_bf_scaffold_4350
Order: Rhizobiales (75%)
4 5103 bp 66.29 5.29 95.18
scnpilot_expt_750_bf_scaffold_9384
Genus: Devosia (100%)
5 5840 bp 68.96 5.48 89.59
scnpilot_expt_750_bf_scaffold_15403
Species: Devosia sp. 17-2-E-8 (60%)
5 5233 bp 64.99 5.35 90.46
scnpilot_expt_750_bf_scaffold_5097
Genus: Devosia (80%)
5 5546 bp 65.65 5.14 81.09
scnpilot_expt_750_bf_scaffold_7662
Species: Devosia sp. LC5 (100%)
5 5016 bp 67.50 6.28 97.79
scnpilot_expt_750_bf_scaffold_2709
Species: Devosia sp. DDB001 (60%)
5 5901 bp 65.43 5.38 84.95
scnpilot_expt_750_bf_scaffold_3287
Genus: Devosia (100%)
5 5148 bp 65.02 4.81 91.90
scnpilot_expt_750_bf_scaffold_8760
Genus: Devosia (80%)
5 5631 bp 66.83 5.95 100.00
scnpilot_expt_750_bf_scaffold_2499
Genus: Devosia (80%)
5 6264 bp 66.24 5.03 98.32
scnpilot_expt_750_bf_scaffold_6984
Phylum: Proteobacteria (80%)
5 5165 bp 61.30 4.16 90.55
scnpilot_expt_750_bf_scaffold_3371
Species: Pelagibacterium halotolerans (60%)
5 5071 bp 68.11 5.18 94.36
scnpilot_expt_750_bf_scaffold_2850
Genus: Devosia (80%)
5 5695 bp 66.39 6.37 98.98
scnpilot_expt_750_bf_scaffold_5521
Order: Rhizobiales (100%)
5 6428 bp 65.20 6.38 76.68
scnpilot_expt_750_bf_scaffold_5267 5 5075 bp 68.53 5.86 83.23
scnpilot_expt_750_bf_scaffold_4895
Genus: Devosia (80%)
5 6167 bp 64.34 5.39 70.78
scnpilot_expt_750_bf_scaffold_9081
Genus: Devosia (80%)
5 5206 bp 67.04 6.72 96.47
scnpilot_expt_750_bf_scaffold_6554
Genus: Devosia (100%)
5 5786 bp 65.64 4.97 89.80
scnpilot_expt_750_bf_scaffold_7070
Genus: Devosia (60%)
5 5456 bp 62.70 4.49 80.17
scnpilot_expt_750_bf_scaffold_2630
Order: Rhizobiales (80%)
5 6022 bp 58.52 5.52 86.68
scnpilot_expt_750_bf_scaffold_5807
Species: Devosia sp. DDB001 (60%)
5 5380 bp 67.03 5.07 95.63
scnpilot_expt_750_bf_scaffold_4437
Genus: Devosia (83.33%)
6 5323 bp 64.59 6.20 87.47
scnpilot_expt_750_bf_scaffold_6864
Species: Devosia sp. DDB001 (50%)
6 6498 bp 64.85 4.89 78.35
scnpilot_expt_750_bf_scaffold_2682
Genus: Devosia (83.33%)
6 5951 bp 65.54 4.20 93.61
scnpilot_expt_750_bf_scaffold_4450
Genus: Devosia (66.67%)
6 5037 bp 65.34 5.61 74.45
scnpilot_expt_750_bf_scaffold_9432
Genus: Devosia (50%)
6 6570 bp 69.50 5.06 99.22
scnpilot_expt_750_bf_scaffold_13122
Species: Devosia sp. DDB001 (66.67%)
6 5618 bp 64.60 4.81 82.98
scnpilot_expt_750_bf_scaffold_4032
Class: Actinobacteria (50%)
6 5978 bp 68.23 4.77 82.25
scnpilot_expt_750_bf_scaffold_4297
Domain: Bacteria (100%)
6 6127 bp 65.28 5.30 85.88
scnpilot_expt_750_bf_scaffold_1885
Species: Nitratireductor pacificus (100%)
6 7748 bp 66.58 5.49 94.71
scnpilot_expt_750_bf_scaffold_2317
Genus: Devosia (66.67%)
6 7416 bp 66.02 5.06 90.98
scnpilot_expt_750_bf_scaffold_7024
Genus: Rhizobium (66.67%)
6 5844 bp 65.86 5.56 94.76
scnpilot_expt_750_bf_scaffold_9579
Order: Rhizobiales (50%)
6 5471 bp 67.50 4.84 88.67
scnpilot_expt_750_bf_scaffold_4631
Genus: Devosia (83.33%)
6 5831 bp 64.48 5.32 89.93
scnpilot_expt_750_bf_scaffold_7577
Species: Pelagibacterium halotolerans (50%)
6 5302 bp 65.31 5.56 85.61
scnpilot_expt_750_bf_scaffold_3448
Species: Devosia sp. DDB001 (100%)
6 5483 bp 65.26 5.65 90.55
scnpilot_expt_750_bf_scaffold_4159
Class: Actinobacteria (57.14%)
7 8249 bp 66.26 5.88 83.25
scnpilot_expt_750_bf_scaffold_7116
Species: uncultured bacterium 1062 (57.14%)
7 7206 bp 65.15 5.41 89.22
scnpilot_expt_750_bf_scaffold_9912
Genus: Devosia (57.14%)
7 5146 bp 65.06 5.10 98.23
scnpilot_expt_750_bf_scaffold_3263
Genus: Devosia (100%)
7 6225 bp 65.41 5.06 87.57
scnpilot_expt_750_bf_scaffold_9937
Genus: Devosia (85.71%)
7 6764 bp 64.56 4.77 82.89
scnpilot_expt_750_bf_scaffold_9952
Species: Devosia soli (57.14%)
7 5346 bp 67.77 6.55 93.83
scnpilot_expt_750_bf_scaffold_9463
Species: Devosia sp. 17-2-E-8 (71.43%)
7 6980 bp 67.84 5.41 94.30
scnpilot_expt_750_bf_scaffold_3849
Domain: Bacteria (85.71%)
7 5796 bp 65.94 4.53 82.40
scnpilot_expt_750_bf_scaffold_4800
Order: Rhizobiales (57.14%)
7 5192 bp 66.06 5.06 79.04
scnpilot_expt_750_bf_scaffold_3627
Species: Devosia sp. DDB001 (57.14%)
7 5700 bp 66.18 5.00 93.47
scnpilot_expt_750_bf_scaffold_2585
Order: Rhizobiales (57.14%)
7 6118 bp 63.34 5.68 67.96
Displaying items 1-50 of 128 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.